PROJECT INFORMATION
GOLD Project ID
Gp0017668  
Project Name
Simiduia agarivorans SA1  
Other Names
  
Legacy ER Project ID
7913  
Legacy GOLD ID
Gi13629, Gc007913  
NCBI BioProject Name Simiduia agarivorans SA1 = DSM 21679
NCBI BioProject ID 74637
NCBI BioProject Accession PRJNA74637
NCBI Locus Tag
M5M  
NCBI BioSample Accession
PI Sen-Lin Tang
Added By JGI automated process on 2012-02-02
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Academia Sinica (Taiwan)
Collaborating Institute
  
Funding Agency
  
Project Description
Simiduia agarivorans SA1 Genome sequencing  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Complete Genome Sequence of Simiduia agarivorans SA1(T), a Marine Bacterium Able To Degrade a Variety of Polysaccharides.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Simkania negevensis Z
Organism Simiduia agarivorans SA1
Analysis Projects Simiduia agarivorans SA1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS Junior
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0013281
Organism Name
Simiduia agarivorans SA1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Simiduia  
Genus Synonyms
  
Species
Simiduia agarivorans  
Subspecies
  
Species Synonyms
  
Strain
SA1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 21679  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13777  
Exemplar Name
Simiduia agarivorans  
Taxon DOI
10.1601/tx.13777  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1117647
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Cellvibrionales  
NCBI Family
Cellvibrionaceae  
NCBI Genus
Simiduia  
NCBI Species
Simiduia agarivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Coastal  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 802432
Genbank 16S ID EF617350
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30-35 C  
Salinity
Halophile  
pH
7-10  
Cell Diameter
0.4-0.6 um  
Cell Length
2.0-5.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Aquatic
Sea water
Metabolisms Nitrate reducer
Phenotypes Vancomycin resistant
Non-Haemolytic
Catalase positive
Streptomycin resistant
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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