PROJECT INFORMATION
GOLD Project ID
Gp0017286  
Project Name
Clostridium senegalense JC122  
Other Names
  
Legacy ER Project ID
7820  
Legacy GOLD ID
Gi13536  
NCBI BioProject Name Clostridium sp. JC122
NCBI BioProject ID 70833
NCBI BioProject Accession PRJEA70833
NCBI Locus Tag
CSGHG  
NCBI BioSample Accession SAMEA2272503
PI Pierre-Edouard Fournier
Added By JGI automated process on 2012-02-02
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Aix-Marseille University (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Clostridium sp. JC122 genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 6(3):386-95 Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov.
Other Publications
  
PROJECT COMPOSITION
Study Culturomics: study of the human digestive flora
Organism Clostridium senegalense JC122
Analysis Projects Clostridium senegalense JC122
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
454 paired end 3-kb library  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
27  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0017286
Organism Name
Clostridium senegalense JC122  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium senegalense  
Subspecies
  
Species Synonyms
  
Strain
JC122  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 25507  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23563  
Exemplar Name
Clostridium senegalense  
Taxon DOI
10.1601/tx.23563  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1033737
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium senegalense  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?