PROJECT INFORMATION
GOLD Project ID
Gp0160644  
Project Name
Planctomycetaceae bacterium JGI M3C4D3-002-D19  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Planctomycetaceae bacterium JGI M3C4D3-002-D19
NCBI BioProject ID 363939
NCBI BioProject Accession PRJNA363939
NCBI Locus Tag
BX248  
NCBI BioSample Accession SAMN07501427
PI Christopher S. Miller
Added By JGI automated process on 2016-10-18
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing of bacterial single cell organism from Lake Erie sediment in Ohio, USA to developing a systems-level understanding of biotic and abiotic controls on microbial methane cycling in freshwater wetlands.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls
Organism Planctomycetaceae bacterium JGI M3C4D3-002-D19
Analysis Projects Planctomycetaceae bacterium JGI M3C4D3-002-D19 (contamination screened)
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina NextSeq-HO
Library Method (MIGS-28)
Production RnD, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0305314
Organism Name
Planctomycetaceae bacterium JGI M3C4D3-002-D19  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PLANCTOMYCETES  
Genus
  
Genus Synonyms
  
Species
Planctomycetaceae bacterium JGI M3C4D3-002-D19  
Subspecies
  
Species Synonyms
  
Strain
JGI M3C4D3-002-D19  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2012788
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Planctomycetes  
NCBI Class
Planctomycetia  
NCBI Order
Planctomycetales  
NCBI Family
Planctomycetaceae  
NCBI Genus
  
NCBI Species
Planctomycetaceae bacterium JGI M3C4D3-002-D19  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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