PROJECT INFORMATION
GOLD Project ID
Gp0155985  
Project Name
Yangia sp. CCB-MM3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Yangia sp. CCB-MM3 Genome sequencing
NCBI BioProject ID 310305
NCBI BioProject Accession PRJNA310305
NCBI Locus Tag
AYJ57  
NCBI BioSample Accession SAMN04450249
PI Nyok-Sean Lau
Added By Nyok-Sean Lau on 2016-09-13
Last Modified By Hema Katta on 2019-01-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Universiti Sains Malaysia Malaysia (Malaysia)
Collaborating Institute
  
Funding Agency
  
Project Description
It is part of a project to characterize the microbiome of Malaysian mangrove soil.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences Genome features of moderately halophilic polyhydroxyalkanoate-producing sp. CCB-MM3.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Yangia sp. CCB-MM3
Organism Yangia sp. CCB-MM3
Analysis Projects Yangia sp. CCB-MM3
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0302042
Organism Name
Yangia sp. CCB-MM3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Yangia  
Genus Synonyms
  
Species
Yangia sp. CCB-MM3  
Subspecies
  
Species Synonyms
  
Strain
CCB-MM3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1792508
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Yangia  
NCBI Species
Yangia sp. CCB-MM3  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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