PROJECT INFORMATION
GOLD Project ID
Gp0014652  
Project Name
Pseudomonas putida NBRC 14164  
Other Names
  
Legacy ER Project ID
28134  
Legacy GOLD ID
Gi20148, Gc0028134  
NCBI BioProject Name Pseudomonas putida NBRC 14164
NCBI BioProject ID 171050
NCBI BioProject Accession PRJDB191
NCBI Locus Tag
PP4  
NCBI BioSample Accession SAMD00061028
PI
Added By JGI automated process on 2012-07-30
Last Modified By Alejandro Rodriguez Mojica on 2018-07-20
Project Comments
Pseudomonas putida has attracted much interest for its environmental, industrial, biotechnological, and clinical importance. Here, we report the complete genome sequence of the type strain P. putida NBRC 14164. This genome sequence will assist to further elucidate the molecular mechanisms of the characteristic traits among strains belonging to the species P. putida.  
Project Status
Complete and Published  
Project Relevance Environmental
Human Pathogen
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Comparative genomics of clinical and environmental Pseudomonas isolates  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements The Complete Genome Sequence of Pseudomonas putida NBRC 14164T Confirms High Intraspecies Variation.
Other Publications
  
PROJECT COMPOSITION
Study Pseudomonas putida NBRC 14164
Organism Pseudomonas putida NBRC 14164
Analysis Projects Pseudomonas putida NBRC 14164
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Illumina
Library Method (MIGS-28)
  
Number Of Reads
6,156,701  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0014652
Organism Name
Pseudomonas putida NBRC 14164  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas putida  
Subspecies
  
Species Synonyms
  
Strain
NBRC 14164  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 14164  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2674  
Exemplar Name
Pseudomonas putida ATCC 12633  
Taxon DOI
10.1601/tx.2674  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1211579
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas putida  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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