PROJECT INFORMATION
GOLD Project ID
Gp0145408  
Project Name
Paracoccus aminovorans HPD-2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Paracoccus aminovorans strain:HPD-2
NCBI BioProject ID 301387
NCBI BioProject Accession PRJNA301387
NCBI Locus Tag
ASV56  
NCBI BioSample Accession SAMN04246163
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Chinese Academy of Sciences, Institute of Soil Science
Collaborating Institute
  
Funding Agency
  
Project Description
Paracoccus aminovorans HPD-2, which was isolated from the polycyclic aromatic hydrocarbon polluted soil in Wuxi, Jiangsu, China, can efciently degrade high molecular weight polycyclic aromatic hydrocarbons (PAHs). Here, we present a 4.6-Mb draft genome sequence of this train, which provided an invaluable genetic background for further investigation of PAHs degradation mechanisms.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Paracoccus aminovorans genome sequencing
Organism Paracoccus aminovorans HPD-2
Analysis Projects Paracoccus aminovorans HPD-2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0140302
Organism Name
Paracoccus aminovorans HPD-2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Paracoccus  
Genus Synonyms
  
Species
Paracoccus aminovorans  
Subspecies
  
Species Synonyms
  
Strain
HPD-2  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 34004
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Paracoccus  
NCBI Species
Paracoccus aminovorans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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