PROJECT INFORMATION
GOLD Project ID
Gp0143648  
Project Name
Alcanivorax sp. NBRC 102028  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name The NBRC Genome Sequencing Project for Pollutant-degrading bacteria
NCBI BioProject ID 248804
NCBI BioProject Accession PRJDB2892
NCBI Locus Tag
A0252  
NCBI BioSample Accession SAMD00048770
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
The microbial biodegradation of pollutants is attracting attention to find feasible ways to clean-up contaminated environments. This project plans to sequence the genomes of bacteria with the ability to degrade chemical compounds including trichloroethene, petroleum hydrocarbons, polychlorinated biphenyls (PCBs), polycyclic aromatic compounds (PACs), etc. The genome information is expected to give new insights into key metabolic pathways and bacterial adaptation to degrade chemicals. The sequence data will be released to the society through the NBRC web site (http://www.bio.nite.go.jp/ngac/e/project_wgs-e.html) and DDBJ/EMBL/GeneBank databases.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study The NBRC Genome Sequencing Project for Pollutant-degrading bacteria
Organism Alcanivorax sp. NBRC 102028
Analysis Projects Alcanivorax sp. NBRC 102028
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0138598
Organism Name
Alcanivorax sp. NBRC 102028  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Alcanivorax  
Genus Synonyms
  
Species
Alcanivorax sp. NBRC 102028  
Subspecies
  
Species Synonyms
  
Strain
NBRC 102028  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 102028  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1113897
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Oceanospirillales  
NCBI Family
Alcanivoracaceae  
NCBI Genus
Alcanivorax  
NCBI Species
Alcanivorax sp. NBRC 102028  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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