PROJECT INFORMATION
GOLD Project ID
Gp0013138  
Project Name
Picrophilus oshimae DSM 9789  
Other Names
  
Legacy ER Project ID
20920  
Legacy GOLD ID
Gi11772  
NCBI BioProject Name Picrophilus oshimae DSM 9789
NCBI BioProject ID 235128
NCBI BioProject Accession PRJNA235128
NCBI Locus Tag
BO31  
NCBI BioSample Accession SAMN02745355
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2014-10-07
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Picrophilus oshimae DSM 9789
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013138
Organism Name
Picrophilus oshimae DSM 9789  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-THERMOPLASMATA  
Genus
Picrophilus  
Genus Synonyms
  
Species
Picrophilus oshimae  
Subspecies
  
Species Synonyms
  
Strain
DSM 9789  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 9789  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.366  
Exemplar Name
Picrophilus oshimae  
Taxon DOI
10.1601/tx.366  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1122961
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Thermoplasmata  
NCBI Order
Thermoplasmatales  
NCBI Family
Picrophilaceae  
NCBI Genus
Picrophilus  
NCBI Species
Picrophilus oshimae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Volcanic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 121874
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
60 C  
Salinity
  
pH
0-3.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Metabolisms
  
Phenotypes Acidophile
Energy Sources Heterotroph

 

 

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