PROJECT INFORMATION
GOLD Project ID
Gp0127238  
Project Name
Lutimaribacter saemankumensis DSM 28010  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Lutimaribacter saemankumensis DSM 28010
NCBI BioProject ID 329836
NCBI BioProject Accession PRJNA329836
NCBI Locus Tag
BCF35  
NCBI BioSample Accession SAMN05421850
PI Markus Göker
Added By JGI automated process on 2016-01-07
Last Modified By JGI automated process on 2019-04-28
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2156193
Experiment Title Lutimaribacter saemankumensis DSM 28010
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AXHZH
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Lutimaribacter saemankumensis DSM 28010
Analysis Projects Lutimaribacter saemankumensis DSM 28010
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0030754
Organism Name
Lutimaribacter saemankumensis DSM 28010  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Lutimaribacter  
Genus Synonyms
  
Species
Lutimaribacter saemankumensis  
Subspecies
  
Species Synonyms
  
Strain
DSM 28010  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 28010  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13738  
Exemplar Name
Lutimaribacter saemankumensis CCUG 55760  
Taxon DOI
10.1601/tx.13738  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 490829
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Lutimaribacter  
NCBI Species
Lutimaribacter saemankumensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID EU33698
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?