PROJECT INFORMATION
GOLD Project ID
Gp0001257  
Project Name
Erythrobacter sp. SD-21  
Other Names
  
Legacy ER Project ID
11151  
Legacy GOLD ID
Gi01412  
NCBI BioProject Name Erythrobacter sp. SD-21
NCBI BioProject ID 19305
NCBI BioProject Accession PRJNA19305
NCBI Locus Tag
ED  
NCBI BioSample Accession SAMN02436098
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute University of California, San Diego (USA)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
GBMF criteria 1 & 4: A Mn(II) oxidizing bacterium. This species (within 97% identitiy) has been isolated from many diverse marine environments including the Yellow Sea, the Western Mediterranean, North Sea surface waters, the Korean East Sea, the deep arctic (72 N, 14 E, -1210m), and the Sea of Okhotaki. In addition to being a robust Mn(II) oxidizer, SD-21 clusters with the aerobic anoxygenic phototrophs which may comprise as much as 11% of the microbial community in the upper ocean and exert a significant impact on global carbon cycling (Kolber, et. al.,2001, Science, 292, 2492). Work in our lab suggests a unique enzymatic mechanism of Mn(II) oxidation distinct from other Mn oxidizers.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Information
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Erythrobacter sp, SD-21
Organism Erythrobacter sp. SD-21
Analysis Projects Erythrobacter sp. SD-21
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001257
Organism Name
Erythrobacter sp. SD-21  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Erythrobacter  
Genus Synonyms
  
Species
Erythrobacter sp. SD-21  
Subspecies
  
Species Synonyms
  
Strain
SD-21  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 161528
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Erythrobacteraceae  
NCBI Genus
Erythrobacter  
NCBI Species
Erythrobacter sp. SD-21  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Sediment
Metabolisms
  
Phenotypes
  
Energy Sources Phototroph

 

 

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