PROJECT INFORMATION
GOLD Project ID
Gp0124890  
Project Name
Bacteroidetes bacterium SCGC AD-308-D03 - v2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacteroidetes bacterium SCGC AD-308-D03 - v2
NCBI BioProject ID 373136
NCBI BioProject Accession PRJNA373136
NCBI Locus Tag
B0854  
NCBI BioSample Accession SAMN06314724
PI Steven Hallam
Added By JGI automated process on 2015-11-14
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Resequencing of single-cell microbial genomes spanning redox gradients within expanding oxygen minimum zones (OMZs) of the northeastern subarctic Pacific Ocean (NESAP)  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Single-cell microbial genomes from expanding oxygen minimum zones (OMZs) of the northeastern subarctic Pacific Ocean (NESAP)
Organism Bacteroidetes bacterium SCGC AD-308-D03
Analysis Projects Bacteroidetes bacterium SCGC AD-308-D03 - v2 (unscreened)
Bacteroidetes bacterium SCGC AD-308-D03 - v2 (contamination screened)
Number of Analysis Projects 2
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
10/27/15-MHS-library and pool made at Bigelow, to be sequenced at JGI  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina NextSeq-HO
Library Method (MIGS-28)
Production RnD, Tubes; Illumina Low Input Fragment - Nextera, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0050748
Organism Name
Bacteroidetes bacterium SCGC AD-308-D03  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
  
Genus Synonyms
  
Species
Bacteroidetes bacterium SCGC AD-308-D03  
Subspecies
  
Species Synonyms
  
Strain
SCGC AD-308-D03  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1449103
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
Bacteroidetes bacterium SCGC AD-308-D03  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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