PROJECT INFORMATION
GOLD Project ID
Gp0124344  
Project Name
Chitinophagaceae bacterium PMP191F  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Chitinophagaceae bacterium PMP191F isolate:PMP191F
NCBI BioProject ID 290986
NCBI BioProject Accession PRJNA290986
NCBI Locus Tag
AO337  
NCBI BioSample Accession SAMN03894433
PI
Added By JGI automated process on 2015-11-06
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of South Carolina School of Medicine
Collaborating Institute
  
Funding Agency
  
Project Description
Peritoneal tumors from a rare cancer called pseudomyxoma peritonei have been found to harbor a range of bacterial species. Some of these bacterial species may contribute to development and/or progression of the cancer. A small number of bacterial species have been isolated from pseudomyxoma peritonei tumors.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Chitinophagaceae bacterium PMP191F
Organism Chitinophagaceae bacterium PMP191F
Analysis Projects Chitinophagaceae bacterium PMP191F
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0118784
Organism Name
Chitinophagaceae bacterium PMP191F  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
  
Genus Synonyms
  
Species
Chitinophagaceae bacterium PMP191F  
Subspecies
  
Species Synonyms
  
Strain
PMP191F  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1691979
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Chitinophagia  
NCBI Order
Chitinophagales  
NCBI Family
Chitinophagaceae  
NCBI Genus
  
NCBI Species
Chitinophagaceae bacterium PMP191F  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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