PROJECT INFORMATION
GOLD Project ID
Gp0124039  
Project Name
Janthinobacterium sp. S3-2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Janthinobacterium sp. S3-2 from freshwater sediment, Aarhus, Denmark
NCBI BioProject ID 300713
NCBI BioProject Accession PRJNA300713
NCBI Locus Tag
ASR47  
NCBI BioSample Accession SAMN04229034
PI Andreas Schramm
Added By Xianzhe Gong on 2015-11-06
Last Modified By Hema Katta on 2019-01-04
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Aarhus University (Denmark)
Collaborating Institute
  
Funding Agency
  
Project Description
Denitrifier isolated from freshwater sediment  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences High quality draft genome sequence of sp. nov., isolated from a frozen freshwater pond.
Other Publications
  
PROJECT COMPOSITION
Study Janthinobacterium sp. S3-2 isolated from freshwater sediment assembled genome
Organism Janthinobacterium sp. S3-2
Analysis Projects Janthinobacterium sp. S3-2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
NexteraXT DNA sample preparation  
Number Of Reads
3761645  
Read Size
300  
Vector
  
GC Percent
61  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0118561
Organism Name
Janthinobacterium sp. S3-2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Janthinobacterium  
Genus Synonyms
  
Species
Janthinobacterium sp. S3-2  
Subspecies
  
Species Synonyms
  
Strain
S3-2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1747903
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Oxalobacteraceae  
NCBI Genus
Janthinobacterium  
NCBI Species
Janthinobacterium sp. S3-2  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Pond  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Psychrotolerant  
Temperature Optimum
0-10 C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?