PROJECT INFORMATION
GOLD Project ID
Gp0120901  
Project Name
Photobacterium swingsii CAIM 1393  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Photobacterium swingsii strain:CAIM 1393
NCBI BioProject ID 286212
NCBI BioProject Accession PRJNA286212
NCBI Locus Tag
AB733  
NCBI BioSample Accession SAMN03766180
PI
Added By JGI automated process on 2015-09-09
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Center for Food Research and Development (CIAD) (Mexico)
Collaborating Institute
  
Funding Agency
  
Project Description
This genome will be used for genomic taxonomy of Photobacterium  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1055080
Experiment Title WGS of Photobacterium swingsii type strain CAIM 1393T
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name CAIM1393-1
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
PROJECT COMPOSITION
Study Photobacterium swingsii strain:CAIM 1393 genome sequencing
Organism Photobacterium swingsii CAIM 1393
Analysis Projects Photobacterium swingsii CAIM 1393
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Ion Torrent PGM
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0031901
Organism Name
Photobacterium swingsii CAIM 1393  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Photobacterium  
Genus Synonyms
  
Species
Photobacterium swingsii  
Subspecies
  
Species Synonyms
  
Strain
CAIM 1393  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CAIM 1393  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.21156  
Exemplar Name
Photobacterium swingsii  
Taxon DOI
10.1601/tx.21156  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 680026
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Photobacterium  
NCBI Species
Photobacterium swingsii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?