PROJECT INFORMATION
GOLD Project ID
Gp0120266  
Project Name
Pseudovibrio sp. Tun.PSC04-5.I4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudovibrio sp. Tun.PSC04-5.I4
NCBI BioProject ID 311457
NCBI BioProject Accession PRJNA311457
NCBI Locus Tag
AXZ90  
NCBI BioSample Accession SAMN04515695
PI Alison Murray
Added By JGI automated process on 2015-08-22
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Lake Vida brine microbial community (LVBMCo) genomics and transcriptomics - a window into diversity, adaptation and processes in extreme cold  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2153078
Experiment Title Pseudovibrio sp. Tun.PHSC04-5.I4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AOOCB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2153079
Experiment Title Pseudovibrio sp. Tun.PHSC04-5.I4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AOOCB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Lake Vida brine microbial community (LVBMCo) genomics and transcriptomics - a window into diversity, adaptation and processes in extreme cold
Organism Pseudovibrio sp. Tun.PSC04-5.I4
Analysis Projects Pseudovibrio sp. Tun.PSC04-5.I4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0115963
Organism Name
Pseudovibrio sp. Tun.PSC04-5.I4  
Other names (alias, synonyms, short names, common names)
Antarctic ascidian-associated Pseudovibrio  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Pseudovibrio  
Genus Synonyms
  
Species
Pseudovibrio sp. Tun.PSC04-5.I4  
Subspecies
  
Species Synonyms
  
Strain
Tun.PSC04-5.I4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
Pseudovibrio sp. Tun.PSC04.5I4 was isolated from the tissues of Antarctic ascidian, Synoicum adareanum.  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1798213
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Pseudovibrio  
NCBI Species
Pseudovibrio sp. Tun.PSC04-5.I4  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Benthic  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Psychrophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Synoicum adareanum  
Symbiont Taxon ID
562745  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Chemoheterotroph

 

 

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