PROJECT INFORMATION
GOLD Project ID
Gp0119521  
Project Name
Kosmotoga pacifica SLHLJ1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Kosmotoga pacifica strain SLHLJ1
NCBI BioProject ID 256122
NCBI BioProject Accession PRJNA256122
NCBI Locus Tag
IX53  
NCBI BioSample Accession SAMN02940556
PI Lijing Jiang
Added By Lijing Jiang on 2015-07-27
Last Modified By Hema Katta on 2019-01-04
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Shanghai Majorbio Bio-pharm Technology Co.
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequence of Kosmotoga pacifica SLHLJ1 isolated from a hydrothermal vent environment  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences Complete genome sequence and whole-genome phylogeny of type strain SLHLJ1 from an East Pacific hydrothermal sediment.
Other Publications
  
PROJECT COMPOSITION
Study Genome sequencing of Kosmotoga pacifica SLHLJ1
Organism Kosmotoga pacifica SLHLJ1
Analysis Projects Kosmotoga pacifica SLHLJ1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina MiSeq
454
Library Method (MIGS-28)
Two genomic libraries: one 454 PE library (3 kb insert size) and one Illumina PE library (300 bp insert size)  
Number Of Reads
637,426 pyrosequences and 4,870,336 Illumina reads  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0115525
Organism Name
Kosmotoga pacifica SLHLJ1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
THERMOTOGAE  
Genus
Kosmotoga  
Genus Synonyms
  
Species
Kosmotoga pacifica  
Subspecies
  
Species Synonyms
  
Strain
SLHLJ1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.26470  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1330330
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Thermotogae  
NCBI Class
Thermotogae  
NCBI Order
Kosmotogales  
NCBI Family
Kosmotogaceae  
NCBI Genus
Kosmotoga  
NCBI Species
Kosmotoga pacifica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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