PROJECT NAME
GOLD Project ID
Gp0117303  
Project Name
Nitrosospira lacus APG3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession PRJNA198005
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA2272307
PI Hidetoshi Urakawa
Added By Hidetoshi Urakawa on 2015-07-01
Last Modified By
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center Aalborg University (Denmark)
Collaborating Institute Aalborg University (Denmark)
Funding Agency
  
Project Description
Analysis of the global genome rearrangement and early evolution of betaproteobacterial AOB  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Nitrosospira lacus APG3
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina, 2x150 bp paired-end reads with a 50 bp overlap  
Number Of Reads
1,310,942,146 reads  
Read Size
150 bp  
Vector
  
GC Percent
53  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0113659
Organism Name
Nitrosospira lacus APG3  
Other names (alias, synonyms, short names, common names)
NCIMB 14869T, LMG 27536T, ATCC BAA-2542T  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Nitrosospira  
Genus Synonyms
  
Species
Nitrosospira lacus  
Subspecies
  
Species Synonyms
  
Strain
APG3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NCIMB 14869, LMG 27536, ATCC BAA-2542  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1288494
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Nitrosomonadales  
NCBI Family
Nitrosomonadaceae  
NCBI Genus
Nitrosospira  
NCBI Species
Nitrosospira lacus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lake  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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