PROJECT INFORMATION
GOLD Project ID
Gp0117073  
Project Name
Thermobifida alba DSM 43795  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Thermobifida alba DSM 43795
NCBI BioProject ID 347001
NCBI BioProject Accession PRJNA347001
NCBI Locus Tag
BJ871  
NCBI BioSample Accession SAMN05877819
PI Hans-Peter Klenk
Added By JGI automated process on 2015-06-23
Last Modified By JGI automated process on 2019-06-11
Project Comments
  
Project Status
targeted  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exploiting the genomes of the Actinobacteria: plant growth promoters and producers of natural products and energy relevant enzymes united in a taxonomically unresolved phylum  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2338694
Experiment Title Thermobifida alba DSM 43795
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTZP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2338695
Experiment Title Thermobifida alba DSM 43795
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTZP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2338696
Experiment Title Thermobifida alba DSM 43795
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTZP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2338697
Experiment Title Thermobifida alba DSM 43795
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTZP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Sequencing the genomes of 1000 actinobacteria strains
Organism Thermobifida alba DSM 43795
Analysis Projects Thermobifida alba DSM 43795
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Awaiting Sample
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio Sequel
PacBio RS II
Library Method (MIGS-28)
PacBio Multiplexed 10kb, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0113625
Organism Name
Thermobifida alba DSM 43795  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Thermobifida  
Genus Synonyms
  
Species
Thermobifida alba  
Subspecies
  
Species Synonyms
  
Strain
DSM 43795  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 43795  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 53522
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Nocardiopsaceae  
NCBI Genus
Thermobifida  
NCBI Species
Thermobifida alba  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF002260
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?