PROJECT INFORMATION
GOLD Project ID
Gp0116537  
Project Name
Gordonia malaquae DSM 45064  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Gordonia malaquae DSM 45064
NCBI BioProject ID 303709
NCBI BioProject Accession PRJNA303709
NCBI Locus Tag
ATJ95  
NCBI BioSample Accession SAMN04488550
PI Hans-Peter Klenk
Added By JGI automated process on 2015-06-23
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exploiting the genomes of the Actinobacteria: plant growth promoters and producers of natural products and energy relevant enzymes united in a taxonomically unresolved phylum  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2142783
Experiment Title Gordonia malaquae DSM 45064
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHUAU
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2142784
Experiment Title Gordonia malaquae DSM 45064
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHUAU
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2142785
Experiment Title Gordonia malaquae DSM 45064
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHUAU
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Sequencing the genomes of 1000 actinobacteria strains
Organism Gordonia malaquae DSM 45064
Analysis Projects Gordonia malaquae DSM 45064
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0113164
Organism Name
Gordonia malaquae DSM 45064  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Gordonia  
Genus Synonyms
  
Species
Gordonia malaquae  
Subspecies
  
Species Synonyms
  
Strain
DSM 45064  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 45064  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10748  
Exemplar Name
Gordonia malaquae  
Taxon DOI
10.1601/tx.10748  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 410332
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Gordoniaceae  
NCBI Genus
Gordonia  
NCBI Species
Gordonia malaquae  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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