PROJECT INFORMATION
GOLD Project ID
Gp0116379  
Project Name
Sphingobacteriaceae bacterium JGI 017  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sphingobacteriaceae bacterium JGI 017
NCBI BioProject ID 373048
NCBI BioProject Accession PRJNA373048
NCBI Locus Tag
B0773  
NCBI BioSample Accession SAMN06320153
PI Jennifer Pett-Ridge
Added By JGI automated process on 2015-06-23
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Unraveling the rhizosphere carbon cycle: Using comparative metatranscriptomics to identify key processes involved in root-enhanced decomposition of organic matter (CSP 2014)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2839514
Experiment Title Sphingobacteriaceae bacterium JGI 017
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Name BAGNT
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Avena fatua rhizosphere microbial communities from Hopland, California, USA
Organism Sphingobacteriaceae bacterium JGI 017
Analysis Projects Sphingobacteriaceae bacterium JGI 017 (unscreened)
Sphingobacteriaceae bacterium JGI 017 (contamination screened)
Number of Analysis Projects 2
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
73-CSP1487.Pett_Ridge.EEN.SYBR.2.I7.sc_A10_080  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina NextSeq-HO
Library Method (MIGS-28)
Production RnD, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0113065
Organism Name
Sphingobacteriaceae bacterium JGI 017  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
  
Genus Synonyms
  
Species
Sphingobacteriaceae bacterium JGI 017  
Subspecies
  
Species Synonyms
  
Strain
JGI 017  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1955645
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Sphingobacteriia  
NCBI Order
Sphingobacteriales  
NCBI Family
Sphingobacteriaceae  
NCBI Genus
  
NCBI Species
Sphingobacteriaceae bacterium JGI 017  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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