PROJECT INFORMATION
GOLD Project ID
Gp0011101  
Project Name
Oceanicola sp. S124  
Other Names
  
Legacy ER Project ID
2625  
Legacy GOLD ID
Gi09787  
NCBI BioProject Name Oceanicola sp. S124
NCBI BioProject ID 67845
NCBI BioProject Accession PRJNA67845
NCBI Locus Tag
OS124  
NCBI BioSample Accession SAMN02470155
PI
Added By Jakob Jansson on 2011-06-24
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Macrogen (USA)
Collaborating Institute Korea Institute of Ocean Science and Technology (KIOST) (South Korea)
Funding Agency
  
Project Description
Oceanicola sp. S124 genome sequencing project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(22):6325 Draft genome sequence of the xylan-degrading marine bacterium strain S124, representing a novel species of the genus Oceanicola.
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Oceanicola sp. S124
Organism Oceanicola sp. S124
Analysis Projects Oceanicola sp. S124
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011101
Organism Name
Oceanicola sp. S124  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Oceanicola  
Genus Synonyms
  
Species
Oceanicola sp. S124  
Subspecies
  
Species Synonyms
  
Strain
S124  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1042378
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Oceanicola  
NCBI Species
Oceanicola sp. S124  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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