PROJECT INFORMATION | |
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GOLD Project ID
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Gp0103676
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Project Name
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Planktotalea frisia DSM 23709
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Other Names
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Legacy ER Project ID
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77760
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Legacy GOLD ID
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Gi0077760
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NCBI BioProject Name |
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NCBI BioProject ID
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262299 |
NCBI BioProject Accession
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PRJNA262299 |
NCBI Locus Tag
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LY10
|
NCBI BioSample Accession
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SAMN05660220 |
PI | Markus Göker |
Added By |
JGI automated process
on 2014-08-25 |
Last Modified By |
JGI automated process
on 2018-10-08 |
Project Comments |
|
Project Status
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Permanent Draft
|
Project Relevance
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|
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
|
Project Description
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Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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Database
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Genome Publications
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Other Publications
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PROJECT COMPOSITION | |
Study |
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera |
Organism |
Planktotalea frisia DSM 23709 |
Analysis Projects |
Planktotalea frisia DSM 23709 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500-1TB Illumina HiSeq 2500 |
Library Method
(MIGS-28)
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Illumina Regular Fragment, 300bp, Plates
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0103676 |
Organism Name |
Planktotalea frisia DSM 23709
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Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
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Phylogeny |
PROTEOBACTERIA-ALPHA
|
Genus |
Planktotalea
|
Genus Synonyms |
|
Species |
Planktotalea frisia
|
Subspecies |
|
Species Synonyms |
|
Strain |
DSM 23709
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
DSM 23709
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.23186
|
Exemplar Name |
Planktotalea frisia
|
Taxon DOI |
10.1601/tx.23186
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
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Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
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ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
696762 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Alphaproteobacteria
|
NCBI Order |
Rhodobacterales
|
NCBI Family |
Rhodobacteraceae
|
NCBI Genus |
Planktotalea
|
NCBI Species |
Planktotalea frisia
|
ISOLATION CLASSIFICATION | |
Ecosystem |
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Ecosystem Category |
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Ecosystem Type |
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Ecosystem Subtype |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
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Motility |
Nonmotile
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Sporulation |
|
Temperature Range |
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Temperature Optimum |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
Marine Sea water |
Metabolisms |
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Phenotypes |
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Energy Sources |
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CYANOBACTERIA METADATA | |
Filaments |
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Filament Type |
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Differentiated Cells |
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Position Of Heterocysts |
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Cysts |
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Mode Of Reproduction |
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Trichome |
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Trichome Type |
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Carotenoids |
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Pigments |
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Phage Infectivity |
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Phage Type |
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Restriction Enzyme |
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Toxin Production |
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Toxin Type |
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Secondary Metabolites |
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Developmental Cycle |
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Branching |
|
Gas Vesicles |
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Gas Vesicle Type |
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Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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