Studies
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38,678 |
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Biosamples
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80,366 |
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Sequencing Projects
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301,303 |
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Analysis Projects
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244,087 |
| Organisms | 362,420 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0103676
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Project Name
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Planktotalea frisia DSM 23709
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Other Names
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Legacy ER Project ID
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77760
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Legacy GOLD ID
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Gi0077760
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| NCBI BioProject Name |
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NCBI BioProject ID
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262299 |
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NCBI BioProject Accession
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PRJNA262299 |
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NCBI Locus Tag
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LY10
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NCBI BioSample Accession
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SAMN05660220 |
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| PI | Markus Göker | ||||||||||||||||||
| Added By |
JGI automated process
on 2014-08-25 |
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| Last Modified By |
JGI automated process
on 2019-04-29 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera |
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| Organism |
Planktotalea frisia DSM 23709 |
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| Analysis Projects |
Planktotalea frisia DSM 23709 |
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| Number of Analysis Projects |
1 |
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| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
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Level 1: Standard Draft |
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500-1TB Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Illumina Regular Fragment, 300bp, Plates
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0103676 |
| Organism Name |
Planktotalea frisia DSM 23709
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Planktotalea
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| Genus Synonyms |
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| Species |
Planktotalea frisia
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 23709
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 23709
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.23186
|
| Exemplar Name |
Planktotalea frisia
|
| Taxon DOI |
10.1601/tx.23186
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
696762 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhodobacterales
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| NCBI Family |
Rhodobacteraceae
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| NCBI Genus |
Planktotalea
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| NCBI Species |
Planktotalea frisia
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
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| Motility |
Nonmotile
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| Sporulation |
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| Temperature Range |
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| Temperature Optimum |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Marine Sea water |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
|
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