PROJECT INFORMATION
GOLD Project ID
Gp0101982  
Project Name
Nonlabens ulvanivorans PLR  
Other Names
  
Legacy ER Project ID
76755  
Legacy GOLD ID
Gi0076755  
NCBI BioProject Name Nonlabens ulvanivorans
NCBI BioProject ID 255202
NCBI BioProject Accession PRJNA255202
NCBI Locus Tag
IL45  
NCBI BioSample Accession SAMN02911279
PI
Added By JGI automated process on 2014-08-08
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Industrial
Sequencing Center Bar-Ilan University
Collaborating Institute
  
Funding Agency
  
Project Description
Ulvales (Chlorophyta) are worldwide distributed green seaweeds. Species of the genus Ulva are the main contributors to green tides, which have become an increasing economic and environmental problem. Although the majority of biomass washed ashore is of little use, the algae’s dry weight is constituted of up to 54% carbohydrates. The main carbohydrate portion is attributed to the sulfated polysaccharide, ulvan, embedded in the algal cell wall. Ulvan composition and structure have been studied in depth for its varied polymeric properties and biological activities. This first draft genome sequence of an ulvan degrading bacterium provides a major step towards the unveiling of the enzymes that participate in Ulva degradation and Ulvales cell wall polysaccharide utilization. Furthermore, it may allow for better characterization and even modification of these untapped polysaccharides in the near future.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Nonlabens ulvanivorans PLR Genome sequencing
Organism Nonlabens ulvanivorans PLR
Analysis Projects Nonlabens ulvanivorans PLR
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
35  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0101982
Organism Name
Nonlabens ulvanivorans PLR  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Nonlabens  
Genus Synonyms
  
Species
Nonlabens ulvanivorans  
Subspecies
  
Species Synonyms
  
Strain
PLR  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.22433  
Exemplar Name
Nonlabens ulvanivorans  
Taxon DOI
10.1601/tx.23134  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 906888
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Nonlabens  
NCBI Species
Nonlabens ulvanivorans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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