Studies
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40,453 |
|
Biosamples
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82,328 |
|
Sequencing Projects
|
316,051 |
|
Analysis Projects
|
250,320 |
| Organisms | 370,304 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0101982
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Project Name
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Nonlabens ulvanivorans PLR
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Other Names
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Legacy ER Project ID
|
76755
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Legacy GOLD ID
|
Gi0076755
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| NCBI BioProject Name | Nonlabens ulvanivorans |
|
NCBI BioProject ID
|
255202 |
|
NCBI BioProject Accession
|
PRJNA255202 |
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NCBI Locus Tag
|
IL45
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NCBI BioSample Accession
|
SAMN02911279 |
| PI | |
| Added By |
JGI automated process
on 2014-08-08 |
| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Industrial |
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Sequencing Center
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Bar-Ilan University
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Collaborating Institute
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Funding Agency
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Project Description
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Ulvales (Chlorophyta) are worldwide distributed green seaweeds. Species of the genus Ulva are the main contributors to green tides, which have become an increasing economic and environmental problem. Although the majority of biomass washed ashore is of little use, the algae’s dry weight is constituted of up to 54% carbohydrates. The main carbohydrate portion is attributed to the sulfated polysaccharide, ulvan, embedded in the algal cell wall. Ulvan composition and structure have been studied in depth for its varied polymeric properties and biological activities. This first draft genome sequence of an ulvan degrading bacterium provides a major step towards the unveiling of the enzymes that participate in Ulva degradation and Ulvales cell wall polysaccharide utilization. Furthermore, it may allow for better characterization and even modification of these untapped polysaccharides in the near future.
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| Is JGI Project |
No
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Nonlabens ulvanivorans PLR Genome sequencing |
| Organism |
Nonlabens ulvanivorans PLR |
| Analysis Projects |
Nonlabens ulvanivorans PLR |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
35
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0101982 |
| Organism Name |
Nonlabens ulvanivorans PLR
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
BACTEROIDETES
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| Genus |
Nonlabens
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| Genus Synonyms |
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| Species |
Nonlabens ulvanivorans
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| Subspecies |
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| Species Synonyms |
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| Strain |
PLR
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.22433
|
| Exemplar Name |
Nonlabens ulvanivorans
|
| Taxon DOI |
10.1601/tx.23134
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
906888 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Bacteroidetes
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| NCBI Class |
Flavobacteriia
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| NCBI Order |
Flavobacteriales
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| NCBI Family |
Flavobacteriaceae
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| NCBI Genus |
Nonlabens
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| NCBI Species |
Nonlabens ulvanivorans
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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