PROJECT INFORMATION
GOLD Project ID
Gp0010193  
Project Name
Salmonella enterica enterica sv. Montevideo IA_2010008282  
Other Names
  
Legacy ER Project ID
19047  
Legacy GOLD ID
Gi08946  
NCBI BioProject Name Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
NCBI BioProject ID 51979
NCBI BioProject Accession PRJNA51979
NCBI Locus Tag
SEEM8282  
NCBI BioSample Accession SAMN00710619
PI
Added By Ionna Pagani on 2011-02-11
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Pathogen
Medical
Sequencing Center U.S. Food and Drug Administration (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Salmonella enterica is a major cause of gastrointestinal illness and foodborne disease. This strain is being sequenced for comparative purposes.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications The New England journal of medicine 364(10):981-2 Identification of a salmonellosis outbreak by means of molecular sequencing.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX119445
Experiment Title Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 by IonTorrent PGM
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
 
SRA Experiment Id SRX105907
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105906
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105905
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105904
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105903
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX103956
Experiment Title Whole genome shotgun sequencing of Salmonella enterica IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105902
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105901
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX149557
Experiment Title Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 by Illumina MiSeq
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica str. IA_2010008282 shotgun
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
Spot Length 302
 
SRA Experiment Id SRX105900
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105899
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105898
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX105897
Experiment Title Whole genome shotgun sequencing of Salmonella enterica Montevideo IA_2010008282 by 454 GS FLX
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Salmonella enterica Montevideo str. IA_2010008282 shotgun
Library Layout SINGLE
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Salmonella enterica enterica sv Montevideo IA_2010008282
Organism Salmonella enterica enterica sv. Montevideo IA_2010008282
Analysis Projects Salmonella enterica enterica sv. Montevideo IA_2010008282
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0010193
Organism Name
Salmonella enterica enterica sv. Montevideo IA_2010008282  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Salmonella  
Genus Synonyms
  
Species
Salmonella enterica  
Subspecies
enterica  
Species Synonyms
  
Strain
IA_2010008282  
Strain Synonyms
  
Serovar/Cultivar
Montevideo  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 882864
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Salmonella  
NCBI Species
Salmonella enterica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Gastroenteritis
Salmonellosis
Food poisoning
Known Habitats Soil
Host
Food
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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