PROJECT INFORMATION
GOLD Project ID
Gp0010150  
Project Name
Mycobacterium avium paratuberculosis S397  
Other Names
  
Legacy ER Project ID
2119  
Legacy GOLD ID
Gi09178  
NCBI BioProject Name Mycobacterium avium subsp. paratuberculosis S397
NCBI BioProject ID 66075
NCBI BioProject Accession PRJNA66075
NCBI Locus Tag
MAPS  
NCBI BioSample Accession SAMN02470597
PI Darrell Bayles
Added By Ionna Pagani on 2011-03-16
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Sheep Pathogen
Animal Pathogen
Human Pathogen
Sequencing Center U.S. Department of Agriculture (France)
Collaborating Institute
  
Funding Agency U.S. Department of Agriculture (France)
Project Description
This strain was isolated from a Suffolk breed of sheep with Johne's disease in the United States  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications BMC genomics 13(89):89 Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association.
Other Publications
  
PROJECT COMPOSITION
Study Mycobacterium avium paratuberculosis S397
Organism Mycobacterium avium paratuberculosis S397
Analysis Projects Mycobacterium avium paratuberculosis S397
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
454 GS20
Library Method (MIGS-28)
  
Number Of Reads
1159421  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010150
Organism Name
Mycobacterium avium paratuberculosis S397  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Mycobacterium  
Genus Synonyms
  
Species
Mycobacterium avium  
Subspecies
paratuberculosis  
Species Synonyms
  
Strain
S397  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1010838
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycobacterium  
NCBI Species
Mycobacterium avium  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Johne's disease
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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