PROJECT NAME
GOLD Project ID
Gp0101166  
Project Name
Candidatus Nitrososphaera evergladensis SR1  
Other Names
  
Legacy ER Project ID
76581  
Legacy GOLD ID
Gi0076581, Gc0076581  
NCBI BioProject Name Candidatus Nitrososphaera evergladensis SR1
NCBI BioProject ID 235208
NCBI BioProject Accession PRJNA235208
NCBI Locus Tag
NTE  
NCBI BioSample Accession
PI Eric Triplett
Added By JGI automated process on 2014-07-25
Last Modified By JGI automated process on 2014-08-18
Project Comments
Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center University of Florida (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Activity of ammonia-oxidizing archaea (AOA) leads to the loss of Nitrogen from soil, pollution of water sources and elevated emissions of greenhouse gas.  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 9(7):e101648 Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea.
Other Publications
  
PROJECT COMPOSITION
Study Candidatus Nitrososphaera evergladensis SR1 Genome sequencing
Analysis Projects Candidatus Nitrososphaera evergladensis SR1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Ion Torrent
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0101166
Organism Name
Candidatus Nitrososphaera evergladensis SR1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
THAUMARCHAEOTA  
Genus
  
Genus Synonyms
  
Species
  
Subspecies
  
Species Synonyms
  
Strain
SR1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1459636
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Thaumarchaeota  
NCBI Class
Nitrososphaeria  
NCBI Order
Nitrososphaerales  
NCBI Family
Nitrososphaeraceae  
NCBI Genus
Nitrososphaera  
NCBI Species
Candidatus Nitrososphaera evergladensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms Ammonia-oxidizer
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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