Studies
|
56,331 |
|
Biosamples
|
196,778 |
|
Sequencing Projects
|
525,147 |
|
Analysis Projects
|
385,410 |
| Organisms | 484,215 |
| ORGANISM INFORMATION | |||||
|---|---|---|---|---|---|
| GOLD Organism ID |
Go0370360 |
||||
|
Organism Name
|
Pelagibacter bacterium JGI 01_G11 |
||||
| Other Names |
|
||||
| Common Name |
|
||||
| Domain |
BACTERIAL |
||||
|
Genus
|
|
||||
| Genus Synonyms |
|
||||
|
Species
|
Pelagibacter bacterium JGI 01_G11 |
||||
| Species Synonyms |
|
||||
| Strain |
JGI 01_G11 |
||||
| Subspecies |
|
||||
|
Phylogenetic Markers
|
|
||||
|
Taxonomy Classification Method
|
|
||||
| Serovar/Cultivar |
|
||||
| Phylum |
PROTEOBACTERIA-ALPHA |
||||
|
NCBI Taxonomy ID
|
|
||||
| Type Strain |
|
||||
| Culture Collection ID |
|
||||
| Organism Type |
Natural |
||||
| Cultured |
No |
||||
| Uncultured Type |
Single Cell |
||||
| Comments |
|
||||
| Biosafety Level |
|
||||
|
Taxon DOI
|
|
||||
|
Exemplar DOI
|
|
||||
|
Exemplar Name
|
|
||||
| Genbank 16S ID |
|
||||
| Is Public |
Yes |
||||
| Related Sequencing Projects |
1 |
||||
| Related Analysis Projects |
1 |
||||
| NCBI TAXONOMY | |||||
|---|---|---|---|---|---|
| NCBI Taxonomy Name |
Candidatus Pelagibacter bacterium JGI 01_G11 |
||||
|
NCBI Tax ID
|
|
||||
| NCBI Superkingdom |
Bacteria |
||||
| NCBI Kingdom |
|
||||
| NCBI Phylum |
Pseudomonadota |
||||
| NCBI Class |
Alphaproteobacteria |
||||
| NCBI Order |
Candidatus Pelagibacterales |
||||
| NCBI Family |
Pelagibacteraceae |
||||
| NCBI Genus |
Candidatus Pelagibacter |
||||
| NCBI Species |
Candidatus Pelagibacter bacterium JGI 01_G11 |
||||
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
|
| Color |
|
| Gram Stain |
|
| Motility |
|
| Oxygen Requirement (MIGS-22) |
|
| pH |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| Sporulation |
|
|
Carbon Source
|
|
| Growth Temperature |
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
|
| Habitats (MIGS-6) |
|
| Metabolism |
|
| Phenotypes |
|
| Energy Sources |
|
| Biotic Relationships (MIGS-14) |
|
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
|
Sample Collection Date
(MIGS-5)
|
12/29/2015 |
|
Sample Isolation Publication
|
|
|
Sample Collection Site
(MIGS-13)
|
seawater |
| Isolation Country/Ocean |
Pacific Ocean |
| Sample Isolation Comments |
|
|
Collection Method
|
|
|
Contact Name
|
Edward DeLong |
|
Contact Email
|
[email protected] |
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Environmental |
| Ecosystem Category |
Aquatic |
| Ecosystem Type |
Marine |
| Ecosystem Subtype |
Oceanic |
| Specific Ecosystem |
Unclassified |
| Ecosystem Path Id |
4008 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
Pacific Ocean: North Pacific Subtropical Gyre |
|
Latitude
(MIGS-4.1)
|
22.6617 |
|
Longitude
(MIGS-4.2)
|
157.9972 |
|
LatLong Information
|
|
| Geographical Map | |
| Broad-scale Environmental Context (MIxS:0000012) |
|
| Local Environmental Context (MIxS:0000013) |
|
| Environmental Medium (MIxS:0000014) |
|
| Altitude (MIGS-4.4) |
|
| Elevation |
|
| Depth (MIGS-4.3) |
25 Meters.
|
| Subsurface Depth |
|
| Temperature Range |
|
| Sample Collection Temperature |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
