Studies
|
47,490 |
|
Biosamples
|
121,670 |
|
Sequencing Projects
|
389,115 |
|
Analysis Projects
|
310,404 |
| Organisms | 403,380 |
| ORGANISM INFORMATION | |
|---|---|
| GOLD Organism ID |
Go0015085 |
|
Organism Name
|
Thermonema rossianum DSM 10300 |
| Other Names |
|
| Common Name |
|
| Domain |
BACTERIAL |
|
Genus
|
Thermonema |
| Genus Synonyms |
|
|
Species
|
Thermonema rossianum |
| Species Synonyms |
|
| Strain |
DSM 10300 |
| Subspecies |
|
|
Phylogenetic Markers
|
|
|
Taxonomy Classification Method
|
|
| Serovar/Cultivar |
|
| Phylum |
BACTEROIDETES |
|
NCBI Taxonomy ID
|
1313301 |
| Type Strain |
Yes |
| Culture Collection ID |
DSM 10300 |
| Organism Type |
Natural |
| Cultured |
Yes |
| Culture Type |
Isolate |
| Comments |
|
| Biosafety Level |
|
|
Taxon DOI
|
10.1601/tx.8330 |
|
Exemplar DOI
|
10.1601/ex.8330 |
|
Exemplar Name
|
Thermonema rossianum |
| Genbank 16S ID |
Y08956 |
| Is Public |
Yes |
| Related Sequencing Projects |
1 |
| Related Analysis Projects |
1 |
| NCBI TAXONOMY | |
|---|---|
| NCBI Organism Name |
Thermonema rossianum DSM 10300 |
|
NCBI Tax ID
|
1313301 |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidetes |
| NCBI Class |
Cytophagia |
| NCBI Order |
Cytophagales |
| NCBI Family |
Thermonemataceae |
| NCBI Genus |
Thermonema |
| NCBI Species |
Thermonema rossianum |
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
|
| Color |
Yellow |
| Gram Stain |
Gram- |
| Motility |
|
| Oxygen Requirement (MIGS-22) |
|
| pH |
|
| Salinity (MIGS-6.3) |
Halophile |
| Pressure |
|
| Sporulation |
|
|
Carbon Source
|
|
| Growth Temperature |
60 Celcius.
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
|
| Habitats (MIGS-6) |
Hot spring Saline water |
| Metabolism |
|
| Phenotypes |
|
| Energy Sources |
|
| Biotic Relationships (MIGS-14) |
Free living |
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
|
Collection Date
(MIGS-5)
|
10/30/2012 |
|
Sample Isolation Publication
|
International journal of systematic bacteriology
47(1):122-6
Thermonema rossianum sp. nov., a new thermophilic and slightly halophilic species from saline hot springs in Naples, Italy.
|
|
Sample Collection Site
(MIGS-13)
|
saline hot springs |
| Isolation Country |
Italy |
| Sample Isolation Comments |
|
|
Collection Method
|
|
|
Contact Name
|
Jonathan Eisen |
|
Contact Email
|
jaeisen@ucdavis.edu |
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Environmental |
| Ecosystem Category |
Aquatic |
| Ecosystem Type |
Thermal springs |
| Ecosystem Subtype |
Unclassified |
| Specific Ecosystem |
Unclassified |
| Ecosystem Path Id |
3991 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
Bay of Naples, Italy |
| Lat/Long Lookup |
|
|
Latitude
(MIGS-4.1)
|
40.735 |
|
Longitude
(MIGS-4.2)
|
14.275 |
|
LatLong Information
|
Inferred |
| Geographical Map | |
| Broad-scale environmental context (MIxS:0000012) |
|
| Local environmental context (MIxS:0000013) |
|
| Environmental medium (MIxS:0000014) |
|
| Altitude (MIGS-4.4) |
|
| Elevation |
|
| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Temperature Range |
Thermophile |
| Sample Collection Temperature |
50 Celcius.
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
