ORGANISM INFORMATION | |||||
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GOLD Organism ID |
Go0667199 |
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Organism Name
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Proteus mirabilis Roy1 |
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Other Names |
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Common Name |
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Domain |
BACTERIAL |
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Genus
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Proteus |
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Genus Synonyms |
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Species
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Proteus mirabilis |
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Species Synonyms |
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Strain |
Roy1 |
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Subspecies |
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Phylogenetic Markers
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Taxonomy Classification Method
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Serovar/Cultivar |
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Phylum |
PSEUDOMONADOTA |
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NCBI Taxonomy ID
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Type Strain |
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Culture Collection ID |
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Organism Type |
Natural |
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Cultured |
Yes |
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Culture Type |
Isolate |
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Comments |
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Biosafety Level |
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Taxon DOI
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Exemplar DOI
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Exemplar Name
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Genbank 16S ID |
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Is Public |
Yes |
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Related Sequencing Projects |
1 |
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Related Analysis Projects |
1 |
NCBI TAXONOMY | |||||
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NCBI Taxonomy Name |
Proteus mirabilis |
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NCBI Tax ID
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NCBI Superkingdom |
Bacteria |
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NCBI Kingdom |
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NCBI Phylum |
Pseudomonadota |
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NCBI Class |
Gammaproteobacteria |
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NCBI Order |
Enterobacterales |
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NCBI Family |
Morganellaceae |
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NCBI Genus |
Proteus |
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NCBI Species |
Proteus mirabilis |
ORGANISM METADATA | |
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Cell Diameter |
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Cell Shape |
Rod-shaped |
Color |
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Gram Stain |
Gram- |
Motility |
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Oxygen Requirement (MIGS-22) |
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pH |
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Salinity (MIGS-6.3) |
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Pressure |
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Sporulation |
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Carbon Source
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Growth Temperature |
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Cell Length |
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Commercial Strain |
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Commercial Strain Comments |
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Cell Arrangements |
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Diseases (MIGS-15) |
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Habitats (MIGS-6) |
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Metabolism |
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Phenotypes |
Commensal Enteropathogenic |
Energy Sources |
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Body Products |
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Biotic Relationships (MIGS-14) |
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Propagation
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ORGANISM ISOLATION | |
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Sample Collection Date
(MIGS-5)
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8/25/2017 |
Sample Isolation Publication
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Scientific reports: 9(1):4313 The influence of the host microbiome on 3,4-methylenedioxymethamphetamine (MDMA)-induced hyperthermia and vice versa. PubMed: 30867489 DOI: 10.1038/s41598-019-40803-3 |
Sample Collection Site
(MIGS-13)
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cecal content of rats treated with 3,4-methylenedioxymethamphetamine |
Isolation Country/Ocean |
USA |
Sample Isolation Comments |
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Collection Method
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In-vitro culture |
Contact Name
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Sayantan R Choudhury, Emily A Ridge, Sara R Bodnar, Sudhan Pachchain, Jon E Sprague, Raymond A Larsen, Vipaporn Phuntumart |
Contact Email
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[email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected] |
ECOSYSTEM CLASSIFICATION
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Ecosystem |
Host-associated |
Ecosystem Category |
Mammals |
Ecosystem Type |
Digestive system |
Ecosystem Subtype |
Large intestine |
Specific Ecosystem |
Cecum |
Ecosystem Path Id |
4105 |
ENVIRONMENTAL INFORMATION | |
Geographic Location
(MIGS-4)
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USA: Bowling Green, Ohio |
Latitude
(MIGS-4.1)
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41.3748 |
Longitude
(MIGS-4.2)
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-83.6513 |
LatLong Information
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Inferred |
Geographical Map | |
Broad-scale Environmental Context (MIxS:0000012) |
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Local Environmental Context (MIxS:0000013) |
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Environmental Medium (MIxS:0000014) |
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Altitude (MIGS-4.4) |
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Elevation |
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Depth (MIGS-4.3) |
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Subsurface Depth |
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Temperature Range |
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Sample Collection Temperature |
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Chlorophyll Concentration |
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Nitrate Concentration |
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Oxygen Concentration |
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Salinity Concentration |
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Methane Concentration (mmol) |
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Sample Conductivity
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Growth Conditions |
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Bicarbonate Concentration (mM) |
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Soluble Iron Concentration (uM) |
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Hydrogen Sulfide Concentration (mM) |
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Hydrogen Sulfide Presence |
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Irradiance |
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ProPortal Ocean |
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ProPortal Isolation |
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ProPortal Station |
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ProPortal WOA Temperature |
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ProPortal WOA Salinty |
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ProPortal WOA Oxygen |
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ProPortal WOA Silicate |
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ProPortal WOA Phosphate |
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ProPortal WOA Nitrate |
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HOST METADATA | |
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Isolation Host Name
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Rattus norvegicus |
Host Taxonomy ID
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10116 |
Host Gender |
Male |
Host Race |
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Host Age |
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Host Health Condition |
Healthy |
Health Disease Status
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Life Threatening |
Patient Visit Number |
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Host Medication |
Treatment with MDMA |
Medical Record Number |
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Host Body Site |
Gastrointestinal tract |
Host Body Subsite |
Cecum |
Host Body Product |
Caecal content |
Host Specificity or Range |
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Host Comments |
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