ORGANISM INFORMATION
GOLD Organism ID Go0667199
Organism Name Proteus mirabilis Roy1
Other Names
Common Name
Domain BACTERIAL
Genus Proteus
Genus Synonyms
Species Proteus mirabilis
Species Synonyms
Strain Roy1
Subspecies
Phylogenetic Markers
Taxonomy Classification Method
Serovar/Cultivar
Phylum PSEUDOMONADOTA
NCBI Taxonomy ID
584  Source is NCBI's Taxonomy
Type Strain
Culture Collection ID
Organism Type Natural
Cultured Yes
Culture Type Isolate
Comments
Biosafety Level
Taxon DOI
Exemplar DOI
Exemplar Name
Genbank 16S ID
Is Public Yes
Related Sequencing Projects 1
Related Analysis Projects 1
   
NCBI TAXONOMY
NCBI Taxonomy Name Proteus mirabilis
NCBI Tax ID
584  Source is NCBI's Taxonomy
NCBI Superkingdom Bacteria
NCBI Kingdom
NCBI Phylum Pseudomonadota
NCBI Class Gammaproteobacteria
NCBI Order Enterobacterales
NCBI Family Morganellaceae
NCBI Genus Proteus
NCBI Species Proteus mirabilis
   
ORGANISM METADATA
Cell Diameter
Cell Shape Rod-shaped
Color
Gram Stain Gram-
Motility
Oxygen Requirement (MIGS-22)
pH
Salinity (MIGS-6.3)
Pressure
Sporulation
Carbon Source
Growth Temperature
Cell Length
Commercial Strain
Commercial Strain Comments
Cell Arrangements
Diseases (MIGS-15)
Habitats (MIGS-6)
Metabolism
Phenotypes Commensal
Enteropathogenic
Energy Sources
Body Products
Biotic Relationships (MIGS-14)
Propagation
   
ORGANISM ISOLATION
Sample Collection Date (MIGS-5) 8/25/2017
Sample Isolation Publication Scientific reports: 9(1):4313 The influence of the host microbiome on 3,4-methylenedioxymethamphetamine (MDMA)-induced hyperthermia and vice versa.
PubMed: 30867489 DOI: 10.1038/s41598-019-40803-3
Please enter a PubMed Id or delete an existing PubMed ID to remove the publication
PubMed Id
Sample Collection Site (MIGS-13) cecal content of rats treated with 3,4-methylenedioxymethamphetamine
Isolation Country/Ocean USA
Sample Isolation Comments
Collection Method In-vitro culture
Contact Name Sayantan R Choudhury, Emily A Ridge, Sara R Bodnar, Sudhan Pachchain, Jon E Sprague, Raymond A Larsen, Vipaporn Phuntumart
Contact Email [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected]
   
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mammals
Ecosystem Type Digestive system
Ecosystem Subtype Large intestine
Specific Ecosystem Cecum
Ecosystem Path Id 4105
ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) USA: Bowling Green, Ohio
Latitude (MIGS-4.1) 41.3748
Longitude (MIGS-4.2) -83.6513
LatLong Information Inferred
Geographical Map
Broad-scale Environmental Context (MIxS:0000012)
Local Environmental Context (MIxS:0000013)
Environmental Medium (MIxS:0000014)
Altitude (MIGS-4.4)
Elevation
Depth (MIGS-4.3)
Subsurface Depth
Temperature Range
Sample Collection Temperature
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Growth Conditions
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence
Irradiance
ProPortal Ocean
ProPortal Isolation
ProPortal Station
ProPortal WOA Temperature
ProPortal WOA Salinty
ProPortal WOA Oxygen
ProPortal WOA Silicate
ProPortal WOA Phosphate
ProPortal WOA Nitrate
   
HOST METADATA
Isolation Host Name Rattus norvegicus
Host Taxonomy ID 10116
Host Gender Male
Host Race
Host Age
Host Health Condition Healthy
Health Disease Status Life Threatening
Patient Visit Number
Host Medication Treatment with MDMA
Medical Record Number
Host Body Site Gastrointestinal tract
Host Body Subsite Cecum
Host Body Product Caecal content
Host Specificity or Range
Host Comments