Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| ORGANISM INFORMATION | |||||
|---|---|---|---|---|---|
| GOLD Organism ID |
Go0666922 |
||||
|
Organism Name
|
Deinococcus betulae HMF7604 |
||||
| Other Names |
|
||||
| Common Name |
|
||||
| Domain |
BACTERIAL |
||||
|
Genus
|
Deinococcus |
||||
| Genus Synonyms |
|
||||
|
Species
|
Deinococcus betulae |
||||
| Species Synonyms |
|
||||
| Strain |
HMF7604 |
||||
| Subspecies |
|
||||
|
Phylogenetic Markers
|
|
||||
|
Taxonomy Classification Method
|
|
||||
| Serovar/Cultivar |
|
||||
| Phylum |
DEINOCOCCOTA |
||||
|
NCBI Taxonomy ID
|
|
||||
| Type Strain |
Yes |
||||
| Culture Collection ID |
|
||||
| Organism Type |
Natural |
||||
| Cultured |
Yes |
||||
| Culture Type |
Isolate |
||||
| Comments |
|
||||
| Biosafety Level |
|
||||
|
Taxon DOI
|
|
||||
|
Exemplar DOI
|
|
||||
|
Exemplar Name
|
|
||||
| Genbank 16S ID |
|
||||
| Is Public |
Yes |
||||
| Related Sequencing Projects |
1 |
||||
| Related Analysis Projects |
1 |
||||
| NCBI TAXONOMY | |||||
|---|---|---|---|---|---|
| NCBI Taxonomy Name |
Deinococcus betulae |
||||
|
NCBI Tax ID
|
|
||||
| NCBI Superkingdom |
Bacteria |
||||
| NCBI Kingdom |
|
||||
| NCBI Phylum |
Deinococcota |
||||
| NCBI Class |
Deinococci |
||||
| NCBI Order |
Deinococcales |
||||
| NCBI Family |
Deinococcaceae |
||||
| NCBI Genus |
Deinococcus |
||||
| NCBI Species |
Deinococcus betulae |
||||
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
|
| Color |
|
| Gram Stain |
Gram- |
| Motility |
Nonmotile |
| Oxygen Requirement (MIGS-22) |
|
| pH |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| Sporulation |
|
|
Carbon Source
|
|
| Growth Temperature |
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
|
| Habitats (MIGS-6) |
|
| Metabolism |
|
| Phenotypes |
|
| Energy Sources |
|
| Body Products |
|
| Biotic Relationships (MIGS-14) |
|
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
|
Sample Collection Date
(MIGS-5)
|
5/1/2017 |
|
Sample Isolation Publication
|
International journal of systematic and evolutionary microbiology: ). PubMed: 36251742 DOI: 10.1099/ijsem.0.005531 |
|
Sample Collection Site
(MIGS-13)
|
bark of birch tree |
| Isolation Country/Ocean |
South Korea |
| Sample Isolation Comments |
|
|
Collection Method
|
|
|
Contact Name
|
Heeyoung Kang |
|
Contact Email
|
[email protected] |
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Type |
Phyllosphere |
| Ecosystem Subtype |
Caulosphere |
| Specific Ecosystem |
Bark |
| Ecosystem Path Id |
5752 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
South Korea: Yong-in, Seoul |
|
Latitude
(MIGS-4.1)
|
|
|
Longitude
(MIGS-4.2)
|
|
|
LatLong Information
|
|
| Geographical Map | No mapping data available. |
| Broad-scale Environmental Context (MIxS:0000012) |
|
| Local Environmental Context (MIxS:0000013) |
|
| Environmental Medium (MIxS:0000014) |
|
| Altitude (MIGS-4.4) |
|
| Elevation |
|
| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Temperature Range |
|
| Sample Collection Temperature |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
| HOST METADATA | |
|---|---|
|
Isolation Host Name
|
Betula platyphylla |
|
Host Taxonomy ID
|
78630 |
| Host Gender |
|
| Host Race |
|
| Host Age |
|
| Host Health Condition |
|
|
Health Disease Status
|
|
| Patient Visit Number |
|
| Host Medication |
|
| Medical Record Number |
|
| Host Body Site |
|
| Host Body Subsite |
|
| Host Body Product |
|
| Host Specificity or Range |
|
| Host Comments |
|
| PLANT ENVIRONMENTAL INFORMATION | |
|---|---|
|
Season Environment
|
|
|
Climate Environment
|
|
|
Gaseous Environment
|
|
|
Growth Temperature
(Celsius)
|
|
|
Plant Depth
(meter)
(MIGS-4.3)
|
|
| Plant Elevation (meter) |
|
|
Gravity
|
|
| HOST INFORMATION | |
|
Host Common Name
|
|
|
Host Taxonomy ID
|
|
|
Host Subspecific Genetic Lineage
|
|
|
Host Symbiont
|
|
|
Host Age
|
|
|
Host Height
|
|
|
Host Length
|
|
|
Host Life Stage
|
|
|
Host Genotype
|
|
|
Host Phenotype
|
|
|
Host Dry Mass
|
|
|
Host Wet Mass
|
|
|
Host Total Mass
|
|
|
Host Disease Status
|
|
|
Plant Growth Medium
|
|
|
Plant Product
|
|
|
Plant Sex
|
|
|
Plant Structure
|
|
|
Genetic Modification
|
|
|
Biological Status
|
|
|
Ancestral Data
|
|
| PHYSIOCHEMICAL PROPERTIES | |
|
Antibiotic Regimen
|
|
|
Biotic Regimen
|
|
| Chemical Administration |
|
|
Chemical Mutagen
|
|
|
Cultured Root Medium
|
|
|
Fertilizer Regimen
|
|
|
Fungicide Regimen
|
|
|
Herbicide Regimen
|
|
|
Pesticide Regimen
|
|
|
Growth Hormone Regimen
|
|
|
Air Temperature Regimen
|
|
|
Humidity Regimen
|
|
|
Light Regimen
|
|
|
Rainfall Regimen
|
|
|
pH Regimen
|
|
|
Salt Regimen
|
|
|
Mineral Nutritional Regimen
|
|
|
Non-Mineral Nutritional Regimen
|
|
| Standing Water Regimen |
|
|
Water Temperature Regimen
|
|
|
Watering Regimen
|
|
|
Radiation Regimen
|
|
|
Perturbation
|
|
|
Mechanical Damage
|
|
|
Sample Disease Stage
|
|
|
Rooting Conditions
|
|
|
Rooting Medium Carbon
|
|
|
Rooting Medium Macronutrients
|
|
|
Rooting Medium Micronutrients
|
|
|
Rooting Medium pH
|
|
|
Rooting Medium Regulators
|
|
|
Rooting Medium Solidifier
|
|
|
Rooting Medium Organic Supplements
|
|
|
Organism Count
|
|
|
Oxygenation Status Of Sample
|
|
|
Sample Salinity
|
|
|
Sample Capture Status
|
|
|
Tissue Culture Growth Medium
|
|
|
Growth Facility
|
|
|
Growth Habit
|
|
|
Miscellaneous Parameters
|
|
| SAMPLE PREPARATION | |
|
Sample Storage Duration
|
|
|
Sample Storage Location
|
|
|
Sample Storage Temperature
(Celsius)
|
|
|
Sample Volume Weight DNA Extraction
|
|
| Package Version |
6 |
