Studies
|
56,334 |
|
Biosamples
|
196,920 |
|
Sequencing Projects
|
525,292 |
|
Analysis Projects
|
385,429 |
| Organisms | 484,221 |
| ORGANISM INFORMATION | |||||
|---|---|---|---|---|---|
| GOLD Organism ID |
Go0648456 |
||||
|
Organism Name
|
Nocardioides okcheonensis MMS20-HV4-12 |
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| Other Names |
|
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| Common Name |
|
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| Domain |
BACTERIAL |
||||
|
Genus
|
Nocardioides |
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| Genus Synonyms |
|
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|
Species
|
Nocardioides okcheonensis |
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| Species Synonyms |
|
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| Strain |
MMS20-HV4-12 |
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| Subspecies |
|
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|
Phylogenetic Markers
|
|
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|
Taxonomy Classification Method
|
|
||||
| Serovar/Cultivar |
|
||||
| Phylum |
ACTINOMYCETOTA |
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|
NCBI Taxonomy ID
|
|
||||
| Type Strain |
Yes |
||||
| Culture Collection ID |
KCTC 49651 |
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| Organism Type |
Natural |
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| Cultured |
Yes |
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| Culture Type |
Isolate |
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| Comments |
|
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| Biosafety Level |
|
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|
Taxon DOI
|
|
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|
Exemplar DOI
|
|
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|
Exemplar Name
|
|
||||
| Genbank 16S ID |
MW193756 |
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| Is Public |
Yes |
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| Related Sequencing Projects |
1 |
||||
| Related Analysis Projects |
1 |
||||
| NCBI TAXONOMY | |||||
|---|---|---|---|---|---|
| NCBI Taxonomy Name |
Nocardioides okcheonensis |
||||
|
NCBI Tax ID
|
|
||||
| NCBI Superkingdom |
Bacteria |
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| NCBI Kingdom |
|
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| NCBI Phylum |
Actinomycetota |
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| NCBI Class |
Actinomycetes |
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| NCBI Order |
Propionibacteriales |
||||
| NCBI Family |
Nocardioidaceae |
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| NCBI Genus |
Nocardioides |
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| NCBI Species |
Nocardioides okcheonensis |
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| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
0.45–0.53 μm |
| Cell Shape |
Rod-shaped |
| Color |
White |
| Gram Stain |
Gram+ |
| Motility |
Nonmotile |
| Oxygen Requirement (MIGS-22) |
|
| pH | Range is 7 to 9 |
| Salinity (MIGS-6.3) |
Halotolerant |
| Pressure |
|
| Sporulation |
|
|
Carbon Source
|
catalase, leucine arylamidase, valine arylamidase and α-glucopyranosidase |
| Growth Temperature | Range is 10 to 37 Celsius. |
| Cell Length |
1.2–1.4 μm |
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
|
| Habitats (MIGS-6) |
Soil |
| Metabolism |
|
| Phenotypes |
|
| Energy Sources |
|
| Biotic Relationships (MIGS-14) |
|
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
|
Sample Collection Date
(MIGS-5)
|
6/6/2020 |
|
Sample Isolation Publication
|
International journal of systematic and evolutionary microbiology: sp. nov., isolated from riverside soil. PubMed: 36940140 DOI: 10.1099/ijsem.0.005755 |
|
Sample Collection Site
(MIGS-13)
|
riverside soil |
| Isolation Country/Ocean |
South Korea |
| Sample Isolation Comments |
soil was resuspended in 9 ml of Ringer’s solution |
|
Collection Method
|
|
|
Contact Name
|
Seung Bum Kim |
|
Contact Email
|
[email protected] |
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Environmental |
| Ecosystem Category |
Aquatic |
| Ecosystem Type |
Freshwater |
| Ecosystem Subtype |
River |
| Specific Ecosystem |
Sediment |
| Ecosystem Path Id |
5109 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
South Korea: Okcheon |
|
Latitude
(MIGS-4.1)
|
36.31216667 |
|
Longitude
(MIGS-4.2)
|
127.72552778 |
|
LatLong Information
|
Verified |
| Geographical Map | |
| Broad-scale Environmental Context (MIxS:0000012) |
|
| Local Environmental Context (MIxS:0000013) |
|
| Environmental Medium (MIxS:0000014) |
|
| Altitude (MIGS-4.4) |
|
| Elevation |
|
| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Temperature Range |
Mesophile |
| Sample Collection Temperature |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
