Studies
|
56,029 |
|
Biosamples
|
191,558 |
|
Sequencing Projects
|
515,648 |
|
Analysis Projects
|
381,515 |
| Organisms | 480,485 |
| ORGANISM INFORMATION | |||||
|---|---|---|---|---|---|
| GOLD Organism ID |
Go0623086 |
||||
|
Organism Name
|
Sphingomonas wittichii JCM 15750 |
||||
| Other Names |
|
||||
| Common Name |
|
||||
| Domain |
BACTERIAL |
||||
|
Genus
|
Sphingomonas |
||||
| Genus Synonyms |
|
||||
|
Species
|
Sphingomonas wittichii |
||||
| Species Synonyms |
|
||||
| Strain |
JCM 15750 |
||||
| Subspecies |
|
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|
Phylogenetic Markers
|
|
||||
|
Taxonomy Classification Method
|
|
||||
| Serovar/Cultivar |
|
||||
| Phylum |
PROTEOBACTERIA-ALPHA |
||||
|
NCBI Taxonomy ID
|
|
||||
| Type Strain |
Yes |
||||
| Culture Collection ID |
JCM 15750 |
||||
| Organism Type |
Natural |
||||
| Cultured |
Yes |
||||
| Culture Type |
Isolate |
||||
| Comments |
|
||||
| Biosafety Level |
|
||||
|
Taxon DOI
|
|
||||
|
Exemplar DOI
|
|
||||
|
Exemplar Name
|
|
||||
| Genbank 16S ID |
X72723 |
||||
| Is Public |
Yes |
||||
| Related Sequencing Projects |
|
||||
| Related Analysis Projects |
|
||||
| NCBI TAXONOMY | |||||
|---|---|---|---|---|---|
| NCBI Taxonomy Name |
Rhizorhabdus wittichii |
||||
|
NCBI Tax ID
|
|
||||
| NCBI Superkingdom |
Bacteria |
||||
| NCBI Kingdom |
|
||||
| NCBI Phylum |
Pseudomonadota |
||||
| NCBI Class |
Alphaproteobacteria |
||||
| NCBI Order |
Sphingomonadales |
||||
| NCBI Family |
Sphingomonadaceae |
||||
| NCBI Genus |
Rhizorhabdus |
||||
| NCBI Species |
Rhizorhabdus wittichii |
||||
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
|
| Color |
|
| Gram Stain |
|
| Motility |
|
| Oxygen Requirement (MIGS-22) |
|
| pH |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| Sporulation |
|
|
Carbon Source
|
|
| Growth Temperature |
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
|
| Habitats (MIGS-6) |
|
| Metabolism |
|
| Phenotypes |
|
| Energy Sources |
|
| Biotic Relationships (MIGS-14) |
|
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
|
Sample Collection Date
(MIGS-5)
|
|
|
Sample Isolation Publication
|
|
|
Sample Collection Site
(MIGS-13)
|
water samples |
| Isolation Country/Ocean |
Germany |
| Sample Isolation Comments |
|
|
Collection Method
|
|
|
Contact Name
|
|
|
Contact Email
|
|
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Environmental |
| Ecosystem Category |
Aquatic |
| Ecosystem Type |
Unclassified |
| Ecosystem Subtype |
Unclassified |
| Specific Ecosystem |
Unclassified |
| Ecosystem Path Id |
3984 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
|
|
Latitude
(MIGS-4.1)
|
|
|
Longitude
(MIGS-4.2)
|
|
|
LatLong Information
|
|
| Geographical Map | No mapping data available. |
| Broad-scale Environmental Context (MIxS:0000012) |
|
| Local Environmental Context (MIxS:0000013) |
|
| Environmental Medium (MIxS:0000014) |
|
| Altitude (MIGS-4.4) |
|
| Elevation |
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| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Temperature Range |
Mesophile |
| Sample Collection Temperature |
30 Celsius.
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
DSM Media # 1 at a temperature of 30C; DSM Media #457 at a temperature of 30C |
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
