ORGANISM INFORMATION | |||||
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GOLD Organism ID |
Go0615179 |
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Organism Name
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Thermorudis pharmacophila Wkt50.2 |
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Other Names |
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Common Name |
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Domain |
BACTERIAL |
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Genus
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Thermorudis |
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Genus Synonyms |
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Species
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Thermorudis pharmacophila |
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Species Synonyms |
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Strain |
Wkt50.2 |
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Subspecies |
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Phylogenetic Markers
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Taxonomy Classification Method
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Serovar/Cultivar |
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Phylum |
CHLOROFLEXI |
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NCBI Taxonomy ID
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Type Strain |
Yes |
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Culture Collection ID |
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Organism Type |
Natural |
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Cultured |
Yes |
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Culture Type |
Isolate |
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Comments |
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Biosafety Level |
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Taxon DOI
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Exemplar DOI
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Exemplar Name
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Genbank 16S ID |
HE794997 |
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Is Public |
Yes |
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Related Sequencing Projects |
1 |
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Related Analysis Projects |
1 |
NCBI TAXONOMY | |||||
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NCBI Taxonomy Name |
Thermorudis pharmacophila |
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NCBI Tax ID
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NCBI Superkingdom |
Bacteria |
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NCBI Kingdom |
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NCBI Phylum |
Chloroflexi |
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NCBI Class |
Thermomicrobia |
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NCBI Order |
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NCBI Family |
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NCBI Genus |
Thermorudis |
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NCBI Species |
Thermorudis pharmacophila |
ORGANISM METADATA | |
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Cell Diameter |
0.9–1.1 um |
Cell Shape |
Rod-shaped |
Color |
Pink |
Gram Stain |
Gram- |
Motility |
Nonmotile |
Oxygen Requirement (MIGS-22) |
Aerobe |
pH | Range is 6 to 8.4 |
Salinity (MIGS-6.3) |
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Pressure |
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Sporulation |
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Carbon Source
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Sucrose, trehalose, raffinose, formate, fumarate, lactate, pyruvate |
Growth Temperature | Range is 50 to 78 Celsius. |
Cell Length |
2.1–2.8 um |
Commercial Strain |
Yes |
Commercial Strain Comments |
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Cell Arrangements |
Singles Pairs Chains |
Diseases (MIGS-15) |
None |
Habitats (MIGS-6) |
Geothermal soil |
Metabolism |
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Phenotypes |
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Energy Sources |
Heterotroph |
Biotic Relationships (MIGS-14) |
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Propagation
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ORGANISM ISOLATION | |
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Sample Collection Date
(MIGS-5)
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2/1/2014 |
Sample Isolation Publication
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International journal of systematic and evolutionary microbiology: 65(12):4479-4487 Thermorudis pharmacophila sp. nov., a novel member of the class Thermomicrobia isolated from geothermal soil, and emended descriptions of Thermomicrobium roseum, Thermomicrobium carboxidum, Thermorudis peleae and Sphaerobacter thermophilus. PubMed: 26374291 DOI: 10.1099/ijsem.0.000598 |
Sample Collection Site
(MIGS-13)
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geothermally heated soil, sampled from a pink-coloured soil profile directly above the hot spring |
Isolation Country/Ocean |
New Zealand |
Sample Isolation Comments |
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Collection Method
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Selection on minimal media |
Contact Name
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Matthew Stott |
Contact Email
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[email protected] |
ECOSYSTEM CLASSIFICATION
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Ecosystem |
Environmental |
Ecosystem Category |
Terrestrial |
Ecosystem Type |
Soil |
Ecosystem Subtype |
Geothermal field |
Specific Ecosystem |
Unclassified |
Ecosystem Path Id |
7915 |
ENVIRONMENTAL INFORMATION | |
Geographic Location
(MIGS-4)
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New Zealand: Waikite |
Latitude
(MIGS-4.1)
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-38.327254 |
Longitude
(MIGS-4.2)
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176.304394 |
LatLong Information
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Verified |
Geographical Map | |
Broad-scale environmental context (MIxS:0000012) |
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Local environmental context (MIxS:0000013) |
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Environmental medium (MIxS:0000014) |
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Altitude (MIGS-4.4) |
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Elevation |
375 Meters.
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Depth (MIGS-4.3) |
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Subsurface Depth |
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Temperature Range |
Thermophile |
Sample Collection Temperature |
64.8 Celsius.
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Chlorophyll Concentration |
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Nitrate Concentration |
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Oxygen Concentration |
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Salinity Concentration |
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Methane Concentration (mmol) |
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Sample Conductivity
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Growth Conditions |
DSM Media # 1470 at a temperature of 68C |
Bicarbonate Concentration (mM) |
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Soluble Iron Concentration (uM) |
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Hydrogen Sulfide Concentration (mM) |
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Hydrogen Sulfide Presence |
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Irradiance |
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ProPortal Ocean |
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ProPortal Isolation |
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ProPortal Station |
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ProPortal WOA Temperature |
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ProPortal WOA Salinty |
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ProPortal WOA Oxygen |
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ProPortal WOA Silicate |
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ProPortal WOA Phosphate |
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ProPortal WOA Nitrate |
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