ORGANISM INFORMATION
GOLD Organism ID Go0532782
Organism Name Cyclobacterium marinum Atlantic-IS
Other Names
Common Name
NCBI Taxonomy ID 68288
Domain BACTERIAL
Phylum BACTEROIDETES
Genus Cyclobacterium
Genus Synonyms
Species Cyclobacterium marinum
Species Synonyms
Serovar/Cultivar
Strain Atlantic-IS
Subspecies
Type Strain
Culture Collection ID
Organism Type Natural
Cultured Yes
Culture Type Isolate
Comments
Biosafety Level 1
Taxon DOI
Exemplar DOI
Exemplar Name
Genbank 16S ID
Is Public Yes
Related Sequencing Projects 1
Related Analysis Projects 1
   
NCBI TAXONOMY
NCBI Organism Name Cyclobacterium
NCBI Tax ID 68288
NCBI Superkingdom Bacteria
NCBI Kingdom
NCBI Phylum Bacteroidetes
NCBI Class Cytophagia
NCBI Order Cytophagales
NCBI Family Cyclobacteriaceae
NCBI Genus Cyclobacterium
NCBI Species
   
ORGANISM METADATA
Cell Diameter
Cell Shape
Color
Gram Stain
Motility
Oxygen Requirement (MIGS-22)
pH
Salinity (MIGS-6.3)
Pressure
Sporulation
Carbon Source
Biotic Relationships (MIGS-14)
Temperature Range
Growth Temperature
Cell Length
Commercial Strain
Commercial Strain Comments
Cell Arrangements
Diseases (MIGS-15)
Habitats (MIGS-6)
Metabolism
Phenotypes
Energy Sources
   
COLLECTION DATE
Collection Date (MIGS-5)
ORGANISM ISOLATION
Sample Isolation Publication
Sample Collection Site (MIGS-13)
Isolation Country
Sample Isolation Comments
Sample Collection Method
Contact Name Indu Sharma
Contact Email indu.sharma@hamptonu.edu
   
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Marine
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path Id 4003
ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4)
Latitude (MIGS-4.1) 37.0567
Longitude (MIGS-4.2) -73.5113
LatLong Information Verified
Geographical Map
Altitude (MIGS-4.4)
Elevation
Depth (MIGS-4.3) Range is 258 to 260 Meters..
Subsurface Depth
Sample Collection Temperature
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Growth Conditions
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence
Irradiance
ProPortal Ocean
ProPortal Isolation
ProPortal Station
ProPortal WOA Temperature
ProPortal WOA Salinty
ProPortal WOA Oxygen
ProPortal WOA Silicate
ProPortal WOA Phosphate
ProPortal WOA Nitrate
   
WATER ENVIRONMENTAL INFORMATION
Water Depth  (meter)  (MIGS-4.3) Range is 258 to 260 Meters..
Water Elevation  (meter) 
Atmospheric Data
Tidal Stage
WATER PHYSIOCHEMICAL PROPERTIES
Alkalinity  (milliequivalent per liter) 
Alkyl Diethers  (mole/liter) 
Aminopeptidase Activity  (mole per liter per hour) 
Ammonium - Water  (mole per liter per hour) 
Bacterial Carbon Production  (nanogram per hour) 
Bacterial Production  (milligram per cubic meter per day) 
Bacterial Respiration  (milligram per cubic meter per day) 
Bishomohopanol
Bromide  (parts per million) 
Calcium
Carbon/Nitrogen Ratio
Chemical Administration
Chloride  (milligram per liter) 
Water Chlorophyll Concentration
Water Current
Density  (gram per cubic meter) 
Diether Lipids  (nanogram per liter) 
Dissolved Carbon Dioxide  (micromole per liter) 
Dissolved Hydrogen  (micromole per liter) 
Dissolved Inorganic Carbon  (microgram per liter) 
Dissolved Inorganic Nitrogen  (microgram per liter) 
Dissolved Inorganic Phosphorus  (microgram per liter) 
Dissolved Organic Carbon  (microgram per liter) 
Dissolved Organic Nitrogen  (microgram per liter) 
Downward PAR  (microEinstein per meter per second) 
Flourescence  (milligram chlorophyll a per cubic meter) 
Glucosidase Activity  (mol per liter per hour) 
Light Intensity  (lux) 
Magnesium
Mean Friction Velocity  (meter per second) 
Mean Peak Friction Velocity  (meter per second) 
N Alkanes  (micromole per liter) 
Nitrate Concentration (Water)  (meter) 
Nitrite  (micromole per liter) 
Organic Matter  (microgram per liter) 
Organic Nitrogen  (microgram per liter) 
Organism Count  (number of organism per cubic meter) 
Oxygenation Status of Sample
Particulate Organic Carbon  (microgram per liter) 
Particulate Organic Nitrogen  (microgram per liter) 
Perturbation
Petroleum Hydrocarbons  (micromole per liter) 
Water pH
Phaeopigments  (milligram per cubic meter) 
Phospholipid Fatty Acid
Photon Flux  (micromole per square meter per second) 
Potassium  (parts per million) 
Water Pressure  (meter) 
Primary Production  (milligram per cubic meter per day) 
Water Dissolved Oxygen
Water Phosphate
Water Silicate
Redox Potential  (millivolt) 
Water Salinity (MIGS-6.3)
Sodium water  (parts per million) 
Soluble Reactive Phosphorus  (micromole per liter) 
Sulfate Water
Sulfide water
Suspended Particulate Matter  (milligram per liter) 
Water Collection Temperature  (Celsius) 
Total Depth Water Column  (meter) 
Total Dissolved Nitrogen  (microgram per liter) 
Total Inorganic Nitrogen  (microgram per liter) 
Total Organic Carbon (Water)  (grams/kilogram) 
Total Particulate Carbon
Total Phosphorus  (micromole per liter) 
Miscellaneous Parameter
WATER SAMPLE PROPERTIES
Sample Storage Duration
Sample Storage Location
Sample Storage Temperature  (degree Celsius) 
Water Pool DNA Extracts
Pool DNA Extracts
Water Sample Weight DNA Extraction