ORGANISM INFORMATION
GOLD Organism ID Go0011184
Organism Name Porphyromonas gingivalis TDC60
Other Names
Common Name
NCBI Taxonomy ID 1030843
Domain BACTERIAL
Phylum BACTEROIDETES
Genus Porphyromonas
Genus Synonyms
Species Porphyromonas gingivalis
Species Synonyms
Serovar
Strain TDC60
Subspecies
Type Strain Unknown
Culture Collection
Organism Type Natural
Cultured Yes
Culture Type Isolate
Comments
Biosafety Level
Strain Info ID
Taxon DOI
Exemplar DOI
Exemplar Name
Genbank 16S ID
Is Public Yes
Last Modified By Tatiparthi Reddy on 2017-03-14
Related Sequencing Projects 1
Related Analysis Projects 1
   
NCBI TAXONOMY
NCBI Organism Name Porphyromonas gingivalis TDC60
NCBI Tax ID 1030843
NCBI Superkingdom Bacteria
NCBI Kingdom
NCBI Phylum Bacteroidetes
NCBI Class Bacteroidia
NCBI Order Bacteroidales
NCBI Family Porphyromonadaceae
NCBI Genus Porphyromonas
NCBI Species Porphyromonas gingivalis
   
ORGANISM METADATA
Cell Diameter
Cell Shape Rod-shaped
Color
Gram Stain Gram-
Motility Nonmotile
Oxygen Requirement (MIGS-22) Anaerobe
pH
Salinity (MIGS-6.3)
Pressure
Sporulation Nonsporulating
Carbon Source
Biotic Relationships (MIGS-14) Free living
Temperature Optimum
Temperature Range Mesophile
Cell Length
Commercial Strain
Commercial Strain Comments
Cell Arrangements
Diseases (MIGS-15) Periodontal infection
Dental plaque
Habitats (MIGS-6) Host
Oral cavity
Gastrointestinal tract
Colon
Respiratory tract
Metabolism
Phenotypes Pathogen
Energy Sources
Body Products
   
COLLECTION DATE
Collection Date (MIGS-5)
ORGANISM ISOLATION
Sample Isolation Publication
Sample Collection Site (MIGS-13) severe human periodontal lesion at Tokyo Dental College in Japan
Isolation Country Japan
Sample Isolation Comments
Sample Collection Method
Contact Name Nakagawa I
Contact Email ichiro-n.bac@tmd.ac.jp
HOST METADATA
Isolation Host Name Homo sapiens
Host Taxonomy ID 9606
Host Gender
Host Race
Host Age
Host Health Condition
Patient Visit Number
Host Medication
Medical Record Number
Host Body Site Oral
Host Body Subsite Gingival crevices
Host Body Product
Host Specificity or Range
Host Comments
   
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Unclassified
Ecosystem Type Unclassified
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) Tokyo Dental College, Japan
LatLong Information Inferred
Latitude (MIGS-4.1) 35.786
Longitude (MIGS-4.2) 139.706
Geographical Map
Altitude (MIGS-4.4)

From: Meters. To: Meters.
Elevation

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Depth (MIGS-4.3)

From: Meters. To: Meters.
Subsurface Depth
Sample Collection Temperature
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Growth Conditions
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence
Irradiance
ProPortal Ocean
ProPortal Isolation
ProPortal Station
ProPortal WOA Temperature
ProPortal WOA Salinty
ProPortal WOA Oxygen
ProPortal WOA Silicate
ProPortal WOA Phosphate
ProPortal WOA Nitrate