Studies
|
56,335 |
|
Biosamples
|
196,965 |
|
Sequencing Projects
|
525,335 |
|
Analysis Projects
|
385,117 |
| Organisms | 484,217 |
| ORGANISM INFORMATION | |||||
|---|---|---|---|---|---|
| GOLD Organism ID |
Go0000514 |
||||
|
Organism Name
|
Ruegeria pomeroyi DSS-3 |
||||
| Other Names |
|
||||
| Common Name |
|
||||
| Domain |
BACTERIAL |
||||
|
Genus
|
Ruegeria |
||||
| Genus Synonyms |
Silicibacter |
||||
|
Species
|
Ruegeria pomeroyi |
||||
| Species Synonyms |
|
||||
| Strain |
DSS-3 |
||||
| Subspecies |
|
||||
|
Phylogenetic Markers
|
|
||||
|
Taxonomy Classification Method
|
|
||||
| Serovar/Cultivar |
|
||||
| Phylum |
PSEUDOMONADOTA |
||||
|
NCBI Taxonomy ID
|
|
||||
| Type Strain |
Yes |
||||
| Culture Collection ID |
ATCC 700808 |
||||
| Organism Type |
Natural |
||||
| Cultured |
Yes |
||||
| Culture Type |
Isolate |
||||
| Comments |
|
||||
| Biosafety Level |
1 |
||||
|
Taxon DOI
|
10.1601/tx.11006 |
||||
|
Exemplar DOI
|
10.1601/ex.1152 |
||||
|
Exemplar Name
|
Ruegeria pomeroyi |
||||
| Genbank 16S ID |
AF098491 |
||||
| Is Public |
Yes |
||||
| Related Sequencing Projects |
61 |
||||
| Related Analysis Projects |
1 |
||||
| NCBI TAXONOMY | |||||
|---|---|---|---|---|---|
| NCBI Taxonomy Name |
Ruegeria pomeroyi DSS-3 |
||||
|
NCBI Tax ID
|
|
||||
| NCBI Superkingdom |
Bacteria |
||||
| NCBI Kingdom |
|
||||
| NCBI Phylum |
Pseudomonadota |
||||
| NCBI Class |
Alphaproteobacteria |
||||
| NCBI Order |
Rhodobacterales |
||||
| NCBI Family |
Roseobacteraceae |
||||
| NCBI Genus |
Ruegeria |
||||
| NCBI Species |
Ruegeria pomeroyi |
||||
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
Rod-shaped |
| Color |
|
| Gram Stain |
Gram- |
| Motility |
Motile |
| Oxygen Requirement (MIGS-22) |
Aerobe |
| pH |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| Sporulation |
|
|
Carbon Source
|
|
| Growth Temperature |
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
None |
| Habitats (MIGS-6) |
Aquatic Fresh water |
| Metabolism |
|
| Phenotypes |
Sulfur cycle |
| Energy Sources |
Heterotroph |
| Biotic Relationships (MIGS-14) |
Free living |
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
|
Sample Collection Date
(MIGS-5)
|
3/1/1998 |
|
Sample Isolation Publication
|
|
|
Sample Collection Site
(MIGS-13)
|
saltwater from water column |
| Isolation Country/Ocean |
USA |
| Sample Isolation Comments |
isolated bt JM Gonsalez |
|
Collection Method
|
|
|
Contact Name
|
Mary Ann Moran |
|
Contact Email
|
[email protected] |
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Environmental |
| Ecosystem Category |
Aquatic |
| Ecosystem Type |
Marine |
| Ecosystem Subtype |
Unclassified |
| Specific Ecosystem |
Unclassified |
| Ecosystem Path Id |
4003 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
USA: Georgia coast |
|
Latitude
(MIGS-4.1)
|
|
|
Longitude
(MIGS-4.2)
|
|
|
LatLong Information
|
|
| Geographical Map | No mapping data available. |
| Broad-scale Environmental Context (MIxS:0000012) |
|
| Local Environmental Context (MIxS:0000013) |
|
| Environmental Medium (MIxS:0000014) |
|
| Altitude (MIGS-4.4) |
|
| Elevation |
|
| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Temperature Range |
Mesophile |
| Sample Collection Temperature |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
