Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,741 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,240 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Biosample ID
|
Gb0314036 |
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|
Biosample Name
|
Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL068 |
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|
Other Names
|
|
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|
Habitat
(MIGS-6)
|
Human nasopharyngeal |
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|
Community
|
microbial communities |
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|
Location
|
from Livermore, California, USA |
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|
Identifier
|
COVID-LLNL068 |
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|
NCBI Taxonomy ID
|
|
||||
|
NCBI Taxonomy Name
|
human nasopharyngeal metagenome |
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|
Add Date
|
2022-01-24 |
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|
Biosample Description
|
Human nasopharyngeal microbial communities from Livermore, California, USA; sample collected from nasopharyngeal (NP) swab |
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|
Biosample Information Visibility
|
Public | ||||
|
ECOSYSTEM CLASSIFICATION
|
|||||
| Ecosystem |
Host-associated |
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| Ecosystem Category |
Mammals: Human |
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| Ecosystem Type |
Respiratory system |
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| Ecosystem Subtype |
Pharynx/Throat |
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| Specific Ecosystem |
Nasopharynx |
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| Ecosystem Path Id |
6103 |
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| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
||||
| Number of Seq Projects |
1 |
||||
| Number of Analysis Projects |
0 |
||||
| Number of Related Biosamples |
210 |
||||
| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
Nasopharyngeal (NP) swab |
|
Sample Collection Date
(MIGS-5)
|
4/2/2020 |
|
Sample Collection Publication
|
|
| Sample Isolation Comments |
|
|
Size Fraction
|
|
| Sample Isolation Country/Ocean |
USA |
|
Sample Collection Method
|
|
|
Sample Contact Name
|
Crystal Jaing |
|
Sample Contact Email
|
[email protected] |
| SIP METADATA | |
| Sample Volume (ul) |
|
| Concentration (ng/ul) |
|
| Fraction Density (g/ml) |
|
| Sample Group Name |
|
| Isotope Label |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |
| ENVIRONMENTAL INFORMATION | |
|---|---|
|
Geographic Location
(MIGS-4)
|
USA: Livermore, California |
|
Latitude
(MIGS-4.1)
|
37.687 |
|
Longitude
(MIGS-4.2)
|
-121.7059 |
|
LatLong Information
|
|
| Geographical Map | |
| Broad-scale Environmental Context (MIxS:0000012) | |
| Local Environmental Context (MIxS:0000013) | |
| Environmental Medium (MIxS:0000014) | |
|
Altitude
(meter)
(MIGS-4.4)
|
|
| Elevation |
|
|
Depth
(MIGS-4.3)
|
|
| Subsurface Depth |
|
| Sample Collection Temperature |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| pH |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Habitat |
Human nasopharyngeal |
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| Oxygen Presence |
|
| GROWTH CONDITIONS | |
| Growth Conditions |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |
| HOST INFORMATION | |
|---|---|
|
Isolation Host Name
|
Homo sapiens |
|
Host Taxonomy ID
|
9606 |
| Host Gender |
|
| Host Race |
|
| Host Age |
|
| Host Health Condition |
|
|
Health Disease Status
|
|
| Patient Visit Number |
|
| Host Medication |
|
| Medical Record Number |
|
| Host Body Site |
Nose |
| Host Body Subsite |
Nasopharynx |
| Host Body Product |
|
| Host Specificity or Range |
|
| Host Comments |
|
| Host Diseases (MIGS-15) |
|
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