Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Biosample ID
|
Gb0279503 |
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|
Biosample Name
|
Sorted cell/s from bean rhizosphere in Michigan, United States - Uncultured microbe JGI_ Shade.VulgaR1.SYBR.1.H18 |
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|
Other Names
|
|
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|
Habitat
(MIGS-6)
|
rhizosphere |
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|
Community
|
sorted cell/s |
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|
Location
|
Michigan, United States |
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|
Identifier
|
Uncultured microbe JGI_ Shade.VulgaR1.SYBR.1.H18 |
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|
NCBI Taxonomy ID
|
|
||||
|
NCBI Taxonomy Name
|
rhizosphere metagenome |
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|
Add Date
|
2020-12-11 |
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|
Biosample Description
|
Sorted cell/s from bean rhizosphere in Michigan, United States |
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|
Biosample Information Visibility
|
Public | ||||
|
ECOSYSTEM CLASSIFICATION
|
|||||
| Ecosystem |
Host-associated |
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| Ecosystem Category |
Plants |
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| Ecosystem Type |
Roots |
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| Ecosystem Subtype |
Rhizosphere |
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| Specific Ecosystem |
Unclassified |
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| Ecosystem Path Id |
5301 |
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| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
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| Number of Seq Projects |
1 |
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| Number of Analysis Projects |
0 |
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| Number of Related Biosamples |
311 |
||||
| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
bean rhizosphere |
|
Sample Collection Date
(MIGS-5)
|
2020-07-31 |
|
Sample Collection Publication
|
|
| Sample Isolation Comments |
|
|
Size Fraction
|
|
| Sample Isolation Country/Ocean |
USA |
|
Sample Collection Method
|
|
|
Sample Contact Name
|
Keara Grady |
|
Sample Contact Email
|
[email protected] |
| SIP METADATA | |
| Sample Volume (ul) |
|
| Concentration (ng/ul) |
|
| Fraction Density (g/ml) |
|
| Sample Group Name |
|
| Isotope Label |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |
| ENVIRONMENTAL INFORMATION | |
|---|---|
|
Geographic Location
(MIGS-4)
|
USA: Michigan |
|
Latitude
(MIGS-4.1)
|
42.688714 |
|
Longitude
(MIGS-4.2)
|
-84.484632 |
|
LatLong Information
|
|
| Geographical Map | |
| Broad-scale Environmental Context (MIxS:0000012) |
|
| Local Environmental Context (MIxS:0000013) |
|
| Environmental Medium (MIxS:0000014) |
|
|
Altitude
(meter)
(MIGS-4.4)
|
|
| Elevation |
270 Meters.
|
|
Depth
(MIGS-4.3)
|
|
| Subsurface Depth |
|
| Sample Collection Temperature |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| pH |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Habitat |
rhizosphere |
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| Oxygen Presence |
|
| GROWTH CONDITIONS | |
| Growth Conditions |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |
| HOST INFORMATION | |
|---|---|
|
Isolation Host Name
|
Phaseolus vulgaris cv. Zenith |
|
Host Taxonomy ID
|
3885 |
| Host Gender |
|
| Host Race |
|
| Host Age |
|
| Host Health Condition |
|
|
Health Disease Status
|
|
| Patient Visit Number |
|
| Host Medication |
|
| Medical Record Number |
|
| Host Body Site |
|
| Host Body Subsite |
|
| Host Body Product |
|
| Host Specificity or Range |
|
| Host Comments |
|
| Host Diseases (MIGS-15) |
|
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