Studies
|
54,052 |
|
Biosamples
|
174,371 |
|
Sequencing Projects
|
485,198 |
|
Analysis Projects
|
368,872 |
| Organisms | 468,053 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Biosample ID
|
Gb0149572 |
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|
Biosample Name
|
Populus tremula x Populus alba 717-1B4 root, 14 days culture from Champenoux, France - G1-2w |
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Other Names
|
|
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Habitat
(MIGS-6)
|
plant roots |
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Community
|
microbial communities |
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Location
|
Champenoux, France |
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Identifier
|
G1-2w |
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NCBI Taxonomy ID
|
|
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NCBI Taxonomy Name
|
root metagenome |
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Add Date
|
2017-02-27 |
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Biosample Description
|
Metatranscriptome of Populus root microbial communities, 14 days on P20MES treated with Gibberellic acid (1uM) |
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Biosample Information Visibility
|
Public | ||||
|
ECOSYSTEM CLASSIFICATION
|
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| Ecosystem |
Host-associated |
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| Ecosystem Category |
Plants |
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| Ecosystem Type |
Roots |
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| Ecosystem Subtype |
Unclassified |
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| Specific Ecosystem |
Unclassified |
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| Ecosystem Path Id |
4466 |
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| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
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| Number of Seq Projects |
1 |
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| Number of Analysis Projects |
0 |
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| Number of Related Biosamples |
696 |
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| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
populus roots |
|
Sample Collection Date
(MIGS-5)
|
10/10/2016 |
|
Sample Collection Publication
|
|
| Sample Isolation Comments |
|
|
Size Fraction
|
|
| Sample Isolation Country/Ocean |
France |
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Sample Collection Method
|
|
|
Sample Contact Name
|
Francis M. MARTIN |
|
Sample Contact Email
|
[email protected] |
| - indicates that you can edit this field inline. Click return to save your edits. | |||||
| ENVIRONMENTAL INFORMATION | |||||
|---|---|---|---|---|---|
|
Geographic Location
(MIGS-4)
|
France: Champenoux, Grand Est |
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|
Latitude
(MIGS-4.1)
|
48.74 |
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|
Longitude
(MIGS-4.2)
|
6.34 |
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|
LatLong Information
|
|
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| Geographical Map | |||||
| Broad-scale environmental context (MIxS:0000012) |
|
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| Local environmental context (MIxS:0000013) |
|
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| Environmental medium (MIxS:0000014) |
|
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|
Altitude
(meter)
(MIGS-4.4)
|
|
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| Elevation |
235 Meters.
|
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|
Depth
(MIGS-4.3)
|
|
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| Subsurface Depth |
|
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| Sample Collection Temperature |
|
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| Salinity (MIGS-6.3) |
|
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| Pressure |
|
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| pH |
|
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| Chlorophyll Concentration |
|
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| Nitrate Concentration |
|
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| Oxygen Concentration |
|
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| Salinity Concentration |
|
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| Methane Concentration (mmol) |
|
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|
Sample Conductivity
|
|
||||
| Habitat |
plant roots |
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| Bicarbonate Concentration (mM) |
|
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| Soluble Iron Concentration (uM) |
|
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| Hydrogen Sulfide Concentration (mM) |
|
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| Hydrogen Sulfide Presence |
|
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| Irradiance |
|
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| Oxygen Presence |
|
||||
| GROWTH CONDITIONS | |||||
| Growth Conditions |
|
||||
| - indicates that you can edit this field inline. Click return to save your edits. | |
| HOST INFORMATION | |
|---|---|
|
Isolation Host Name
|
Populus tremula |
|
Host Taxonomy ID
|
113636 |
| Host Gender |
|
| Host Race |
|
| Host Age |
|
| Host Health Condition |
|
|
Health Disease Status
|
|
| Patient Visit Number |
|
| Host Medication |
|
| Medical Record Number |
|
| Host Body Site |
|
| Host Body Subsite |
|
| Host Body Product |
|
| Host Specificity or Range |
|
| Host Comments |
|
| Host Diseases (MIGS-15) |
|
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