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BIOSAMPLE INFORMATION
GOLD Biosample ID Gb0095243
Biosample Name Cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass
Other Names
Habitat (MIGS-6) Cow rumen associated
Community fungal communities
Location from the University of Illinois at Urbana-Champaign, USA
Identifier for metatranscriptome analysis
NCBI Taxonomy ID
506599  NCBI Metagenome Taxonomy
NCBI Taxonomy Name bovine gut metagenome
Add Date 2014-06-05
Biosample Description
Biosample Information Visibility Public
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mammals
Ecosystem Type Digestive system
Ecosystem Subtype Stomach
Specific Ecosystem Rumen
Ecosystem Path Id 4111
BIOSAMPLE COMPOSITION
Number of Studies 1
Number of Seq Projects 1
Number of Analysis Projects 8
Number of Related Biosamples 20
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BIOSAMPLE ISOLATION
Sample Collection Site (MIGS-13) Bovine rumen
Sample Collection Date (MIGS-5) 2014-06-06
Sample Collection Publication

Sample Isolation Comments
Size Fraction
Sample Isolation Country/Ocean USA
Sample Collection Method
Sample Contact Name Matthias Hess
Sample Contact Email [email protected]
SIP METADATA
Sample Volume (ul)
Concentration (ng/ul)
Fraction Density (g/ml)
Sample Group Name
Isotope Label
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ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) USA: Illinois
Latitude (MIGS-4.1) 40.102108
Longitude (MIGS-4.2) -88.227299
LatLong Information
Geographical Map
Broad-scale Environmental Context (MIxS:0000012)
Local Environmental Context (MIxS:0000013)
Environmental Medium (MIxS:0000014)
Altitude  (meter)  (MIGS-4.4)
Elevation
Depth (MIGS-4.3)
Subsurface Depth
Sample Collection Temperature
Salinity (MIGS-6.3)
Pressure
pH
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Habitat  Cow rumen associated
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence
Irradiance
Oxygen Presence
GROWTH CONDITIONS
Growth Conditions
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HOST INFORMATION
Isolation Host Name Bos taurus
Host Taxonomy ID 9913
Host Gender
Host Race
Host Age
Host Health Condition
Health Disease Status
Patient Visit Number
Host Medication
Medical Record Number
Host Body Site
Host Body Subsite
Host Body Product
Host Specificity or Range
Host Comments
Host Diseases (MIGS-15)

 

 

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