Studies
|
26,123 |
|
Biosamples
|
15,883 |
|
Sequencing Projects
|
97,210 |
|
Analysis Projects
|
79,051 |
| Organisms | 239,107 |
| BIOSAMPLE NAME | |
|---|---|
|
GOLD Biosample ID
|
Gb0050997 |
|
Biosample Name
|
Human periodontal pocket microbial communities from Stanford, California, USA - TM7a |
|
Other Names
|
|
|
Habitat
(MIGS-6)
|
Human oral |
|
Community
|
TM7 microbial communities |
|
Location
|
from healthy individuals, Stanford |
|
Identifier
|
|
|
Add Date
|
2007-12-04 |
| Last Modified By |
Tatiparthi B. Reddy
on 2016-08-26 |
| BIOSAMPLE DESCRIPTION | |
|
Biosample Description
|
Human oral microflora |
|
Biosample Information
|
|
|
Biosample Information Visibility
|
Yes |
|
GOLD CLASSIFICATION
|
|
| Ecosystem |
Host-associated |
| Ecosystem Category |
Human |
| Ecosystem Type |
Digestive system |
| Ecosystem Subtype |
Oral |
| Specific Ecosystem |
Periodontal pockets |
| BIOSAMPLE COMPOSITION | |
| Number of Studies |
1 |
| Number of Seq Projects |
1 |
| Number of Analysis Projects |
1 |
| Number of Related Biosamples |
2 |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
Stanford, California, USA |
|
Sample Collection Date
(MIGS-5)
|
|
|
Sample Collection Publication
|
|
| Sample Isolation Comments |
|
| Sample Isolation Country |
USA |
|
Sample Collection Method
|
|
| Added By |
Nikos Kyrpides
on 2007-12-04 |
|
Sample Contact Name
|
|
|
Sample Contact Email
|
|
| ENVIRONMENTAL INFORMATION | |
|---|---|
|
Geographic Location
(MIGS-4)
|
Stanford, California, USA |
|
Latitude
(MIGS-4.1)
|
37.429308 |
|
Longitude
(MIGS-4.2)
|
-122.169514 |
| Geographical Map | |
|
LatLong Information
|
Inferred |
| Altitude (MIGS-4.4) |
25m |
| Depth (MIGS-4.3) |
|
| Temperature Range |
|
| Sample Collection Temperature |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| pH |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Habitat |
Human oral |
| Growth Conditions |
|
|
Isolation Host Name
|
Homo sapiens |
|
Host Taxonomy ID
|
|
| Host Gender |
|
| Host Race |
|
| Host Age |
|
| Host Health Condition |
|
| Patient Visit Number |
|
| Host Medication |
|
| Medical Record Number |
|
| Host Body Site |
|
| Host Body Subsite |
|
| Host Body Product |
|
| Host Specificity or Range |
|
| Host Comments |
|
Custom Biogas/Reactor Metadata Package* oDM - organic dry matter | |
| Substrates |
|
| Temperature |
|
| Retention Time |
|
| Yield (L/Kg-oDM) |
|
| Volatile Organic Acids (VOA) |
|
| Total Inorganic Carbon (TIC) |
|
| VOA/TIC |
|
| Acetic Acid |
|
| Ammonium |
|
| Butanol |
|
| Ethanol |
|
| Propanol |
|
| Methanol |
|
| Butyl Acid |
|
| Iso Butyl Acid |
|
| Valeric Acid |
|
| Iso Valeric Acid |
|
| Propionic Acid |
|
| Methane Percentage |
|
