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BIOSAMPLE INFORMATION
GOLD Biosample ID Gb0342760
Biosample Name Barros Negros
Other Names bn
Habitat (MIGS-6) hypersaline
Community microbial
Location Atacama Chile
Identifier hypersaline
NCBI Taxonomy ID
904678  NCBI Metagenome Taxonomy
NCBI Taxonomy Name hypersaline lake metagenome
Add Date 2022-08-03
Biosample Description microbial mat sample taken from BarrosNegros lake
Biosample Information Visibility Public
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Non-marine Saline and Alkaline
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path Id 3970
BIOSAMPLE COMPOSITION
Number of Studies 1
Number of Seq Projects 1
Number of Analysis Projects 1
Number of Related Biosamples 0
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BIOSAMPLE ISOLATION
Sample Collection Site (MIGS-13) Laguna Barros Negros
Sample Collection Date (MIGS-5) 3/2020
Sample Collection Publication
Sample Isolation Comments
Size Fraction
Sample Isolation Country/Ocean Chile
Sample Collection Method
Sample Contact Name virginia marcelino
Sample Contact Email [email protected]
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ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) chile
Latitude (MIGS-4.1) -23.35
Longitude (MIGS-4.2) -68.15
LatLong Information Inferred
Geographical Map
Broad-scale environmental context (MIxS:0000012)
Local environmental context (MIxS:0000013)
Environmental medium (MIxS:0000014)
Altitude  (meter)  (MIGS-4.4)
Elevation
Depth (MIGS-4.3)
Subsurface Depth
Sample Collection Temperature
Salinity (MIGS-6.3)
Pressure
pH
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Habitat  hypersaline
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence
Irradiance
Oxygen Presence
GROWTH CONDITIONS
Growth Conditions
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ENVIRONMENTAL INFORMATION
Microbial Mat Depth  (meter)  (MIGS-4.3)
Microbial Mat Elevation  (meter) 
PHYSIOCHEMICAL PROPERTIES
Alkalinity  (milliequivalent per liter) 
Alkyl Diethers  (mole/liter) 
Aminopeptidase Activity  (mole per liter per hour) 
Microbial Mat Ammonium  (mole per liter per hour) 
Bacterial Carbon Production  (nanogram per hour) 
Biomass  (milligram per cubic meter per day) 
Bishomohopanol
Bromide  (parts per million) 
Calcium
Carbon/Nitrogen Ratio
Chemical Administration
Chloride  (milligram per liter) 
Chlorophyll
Diether Lipids  (nanogram per liter) 
Dissolved Carbon Dioxide  (micromole per liter) 
Dissolved Hydrogen  (micromole per liter) 
Dissolved Inorganic Carbon  (microgram per liter) 
Dissolved Organic Carbon  (microgram per liter) 
Dissolved Organic Nitrogen  (microgram per liter) 
Dissolved Oxygen  (microgram per liter) 
Glucosidase Activity  (mol per liter per hour) 
Magnesium
Mean Friction Velocity  (meter per second) 
Mean Peak Friction Velocity  (meter per second) 
Methane
N Alkanes  (micromole per liter) 
Nitrate  (micromole per liter) 
Nitrite  (micromole per liter) 
Nitrogen  (microgram per liter) 
Organic Carbon  (microgram per liter) 
Organic Matter  (microgram per liter) 
Organic Nitrogen  (microgram per liter) 
Organism Count  (number of organism per cubic meter) 
Oxygenation Status of Sample
Particulate Organic Carbon  (microgram per liter) 
Perturbation
Petroleum Hydrocarbons  (micromole per liter) 
Microbial Mat pH
Phaeopigments  (milligram per cubic meter) 
Microbial Mat Phosphate
Phospholipid Fatty Acid
Potassium  (parts per million) 
Pressure  (meter) 
Redox Potential  (millivolt) 
Microbial Mat Salinity
Silicate  (parts per million) 
Sodium  (parts per million) 
Sulfate
Sulfide
Microbial Mat Temperature  (Celsius) 
Total Carbon  (grams/kilogram) 
Total Nitrogen Content  (microgram per liter) 
Total Organic Carbon  (grams/kilogram) 
Turbidity
Water Content
Miscellaneous Parameter
SAMPLE PREPARATION
Sample Storage Duration
Sample Storage Location
Sample Storage Temperature  (degree Celsius) 
Sample Volume Weight DNA Extraction

 

 

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