Studies
|
54,052 |
|
Biosamples
|
174,371 |
|
Sequencing Projects
|
485,198 |
|
Analysis Projects
|
368,875 |
| Organisms | 468,054 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Biosample ID
|
Gb0342760 |
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|
Biosample Name
|
Barros Negros |
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|
Other Names
|
bn |
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Habitat
(MIGS-6)
|
hypersaline |
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|
Community
|
microbial |
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Location
|
Atacama Chile |
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Identifier
|
hypersaline |
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NCBI Taxonomy ID
|
|
||||
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NCBI Taxonomy Name
|
hypersaline lake metagenome |
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Add Date
|
2022-08-03 |
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Biosample Description
|
microbial mat sample taken from BarrosNegros lake |
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Biosample Information Visibility
|
Public | ||||
|
ECOSYSTEM CLASSIFICATION
|
|||||
| Ecosystem |
Environmental |
||||
| Ecosystem Category |
Aquatic |
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| Ecosystem Type |
Non-marine Saline and Alkaline |
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| Ecosystem Subtype |
Unclassified |
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| Specific Ecosystem |
Unclassified |
||||
| Ecosystem Path Id |
3970 |
||||
| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
||||
| Number of Seq Projects |
1 |
||||
| Number of Analysis Projects |
1 |
||||
| Number of Related Biosamples |
0 |
||||
| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
Laguna Barros Negros |
|
Sample Collection Date
(MIGS-5)
|
3/2020 |
|
Sample Collection Publication
|
|
| Sample Isolation Comments |
|
|
Size Fraction
|
|
| Sample Isolation Country/Ocean |
Chile |
|
Sample Collection Method
|
|
|
Sample Contact Name
|
virginia marcelino |
|
Sample Contact Email
|
[email protected] |
| - indicates that you can edit this field inline. Click return to save your edits. | |
| ENVIRONMENTAL INFORMATION | |
|---|---|
|
Geographic Location
(MIGS-4)
|
chile |
|
Latitude
(MIGS-4.1)
|
-23.35 |
|
Longitude
(MIGS-4.2)
|
-68.15 |
|
LatLong Information
|
Inferred |
| Geographical Map | |
| Broad-scale environmental context (MIxS:0000012) |
|
| Local environmental context (MIxS:0000013) |
|
| Environmental medium (MIxS:0000014) |
|
|
Altitude
(meter)
(MIGS-4.4)
|
|
| Elevation |
|
|
Depth
(MIGS-4.3)
|
|
| Subsurface Depth |
|
| Sample Collection Temperature |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| pH |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Habitat |
hypersaline |
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| Oxygen Presence |
|
| GROWTH CONDITIONS | |
| Growth Conditions |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |
| ENVIRONMENTAL INFORMATION | |
|---|---|
|
Microbial Mat Depth
(meter)
(MIGS-4.3)
|
|
| Microbial Mat Elevation (meter) |
|
| PHYSIOCHEMICAL PROPERTIES | |
| Alkalinity (milliequivalent per liter) |
|
|
Alkyl Diethers
(mole/liter)
|
|
| Aminopeptidase Activity (mole per liter per hour) |
|
|
Microbial Mat Ammonium
(mole per liter per hour)
|
|
|
Bacterial Carbon Production
(nanogram per hour)
|
|
|
Biomass
(milligram per cubic meter per day)
|
|
|
Bishomohopanol
|
|
|
Bromide
(parts per million)
|
|
|
Calcium
|
|
|
Carbon/Nitrogen Ratio
|
|
|
Chemical Administration
|
|
|
Chloride
(milligram per liter)
|
|
|
Chlorophyll
|
|
|
Diether Lipids
(nanogram per liter)
|
|
|
Dissolved Carbon Dioxide
(micromole per liter)
|
|
|
Dissolved Hydrogen
(micromole per liter)
|
|
|
Dissolved Inorganic Carbon
(microgram per liter)
|
|
|
Dissolved Organic Carbon
(microgram per liter)
|
|
|
Dissolved Organic Nitrogen
(microgram per liter)
|
|
|
Dissolved Oxygen
(microgram per liter)
|
|
|
Glucosidase Activity
(mol per liter per hour)
|
|
|
Magnesium
|
|
|
Mean Friction Velocity
(meter per second)
|
|
|
Mean Peak Friction Velocity
(meter per second)
|
|
|
Methane
|
|
|
N Alkanes
(micromole per liter)
|
|
| Nitrate (micromole per liter) |
|
|
Nitrite
(micromole per liter)
|
|
|
Nitrogen
(microgram per liter)
|
|
|
Organic Carbon
(microgram per liter)
|
|
|
Organic Matter
(microgram per liter)
|
|
|
Organic Nitrogen
(microgram per liter)
|
|
|
Organism Count
(number of organism per cubic meter)
|
|
|
Oxygenation Status of Sample
|
|
|
Particulate Organic Carbon
(microgram per liter)
|
|
|
Perturbation
|
|
|
Petroleum Hydrocarbons
(micromole per liter)
|
|
| Microbial Mat pH |
|
|
Phaeopigments
(milligram per cubic meter)
|
|
| Microbial Mat Phosphate |
|
|
Phospholipid Fatty Acid
|
|
|
Potassium
(parts per million)
|
|
| Pressure (meter) |
|
|
Redox Potential
(millivolt)
|
|
| Microbial Mat Salinity |
|
|
Silicate
(parts per million)
|
|
|
Sodium
(parts per million)
|
|
| Sulfate |
|
|
Sulfide
|
|
|
Microbial Mat Temperature
(Celsius)
|
|
|
Total Carbon
(grams/kilogram)
|
|
|
Total Nitrogen Content
(microgram per liter)
|
|
|
Total Organic Carbon
(grams/kilogram)
|
|
|
Turbidity
|
|
|
Water Content
|
|
|
Miscellaneous Parameter
|
|
| SAMPLE PREPARATION | |
| Sample Storage Duration |
|
|
Sample Storage Location
|
|
|
Sample Storage Temperature
(degree Celsius)
|
|
|
Sample Volume Weight DNA Extraction
|
|
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