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BIOSAMPLE INFORMATION
GOLD Biosample ID Gb0308025
Biosample Name Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB
Other Names AucOB
Habitat (MIGS-6) Biofilm
Community Microbial communities
Location seawater aquarium denitrification system in Montreal, Quebec, Canada
Identifier AucOB
NCBI Taxonomy ID
718308  NCBI Metagenome Taxonomy
NCBI Taxonomy Name biofilm metagenome
Add Date 2021-12-10
Biosample Description Biofilm taken from a fluidized-bed, methanol-fed denitrification system treating seawater and preserved at -70C for 14 years
Biosample Information Visibility Public
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Bioreactor
Ecosystem Type Denitrification
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path Id 6986
BIOSAMPLE COMPOSITION
Number of Studies 1
Number of Seq Projects 1
Number of Analysis Projects 1
Number of Related Biosamples 7
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BIOSAMPLE ISOLATION
Sample Collection Site (MIGS-13) Biofilm attached to supports in a 1000-liter denitrification reactor
Sample Collection Date (MIGS-5) 6/1/2006
Sample Collection Publication

Sample Isolation Comments Supports from the reactor were taken in 2006 and preserved at -70C; Total RNA was extracted from supports
Size Fraction
Sample Isolation Country/Ocean Canada
Sample Collection Method Scrapping the biofilm from supports
Sample Contact Name Julie Auclair
Sample Contact Email [email protected]
SIP METADATA
Sample Volume (ul)
Concentration (ng/ul)
Fraction Density (g/ml)
Sample Group Name
Isotope Label
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ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) Canada: Montreal, Province of Quebec
Latitude (MIGS-4.1) 45.55969914713142
Longitude (MIGS-4.2) -73.54967371477622
LatLong Information Verified
Geographical Map
Broad-scale environmental context (MIxS:0000012)
Local environmental context (MIxS:0000013)
Environmental medium (MIxS:0000014)
Altitude  (meter)  (MIGS-4.4)
Elevation
Depth (MIGS-4.3)
Subsurface Depth
Sample Collection Temperature Range is 18 to 18 Celsius.
Salinity (MIGS-6.3) Halophile
Pressure
pH
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Habitat  Biofilm
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence
Irradiance
Oxygen Presence
GROWTH CONDITIONS
Growth Conditions

Custom Biogas/Reactor Metadata Package

* oDM - organic dry matter
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Substrates
Temperature
Retention Time
Yield (L/Kg-oDM)
Volatile Organic Acids (VOA)
Total Inorganic Carbon (TIC)
VOA/TIC
Acetic Acid
Ammonium
Butanol
Ethanol
Propanol
Methanol
Butyl Acid
Iso Butyl Acid
Valeric Acid
Iso Valeric Acid
Propionic Acid
Methane Percentage

 

 

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