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BIOSAMPLE INFORMATION
GOLD Biosample ID Gb0308024
Biosample Name Lab-enriched, denitrifying biofilm microbial community from biofilm cultures in Laval, Quebec, Canada - 900nitrate30C
Other Names 900nitrate30C
Habitat (MIGS-6) Biofilm
Community Microbial communities
Location Biofilm cultures in Laval, Quebec, Canada
Identifier 900nitrate30C
NCBI Taxonomy ID
718308  NCBI Metagenome Taxonomy
NCBI Taxonomy Name biofilm metagenome
Add Date 2021-12-10
Biosample Description Anoxic culture of a biofilm taken from a fluidized-bed, methanol-fed denitrification reactor and cultured in 60-mL vials with supports in artificial seawater medium under anoxic conditions with methanol, high level nitrate and at 30C
Biosample Information Visibility Public
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Bioreactor
Ecosystem Type Denitrification
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path Id 6986
BIOSAMPLE COMPOSITION
Number of Studies 1
Number of Seq Projects 1
Number of Analysis Projects 1
Number of Related Biosamples 7
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BIOSAMPLE ISOLATION
Sample Collection Site (MIGS-13) Biofilm attached to support in 60-mL vial cultures
Sample Collection Date (MIGS-5) 8/1/2014
Sample Collection Publication

Sample Isolation Comments The vials were sampled at the end of a nitrate reduction cycle in a atmosphere-control chamber filled with nitrogen gas; Supports were taken and preserved at -70C. Total RNA was extracted from supports.
Size Fraction
Sample Isolation Country/Ocean Canada
Sample Collection Method
Sample Contact Name Geneviève Payette
Sample Contact Email [email protected]
SIP METADATA
Sample Volume (ul)
Concentration (ng/ul)
Fraction Density (g/ml)
Sample Group Name
Isotope Label
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ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) Canada: Laval, Province of Quebec
Latitude (MIGS-4.1) 45.54491579022126
Longitude (MIGS-4.2) -73.71990935206082
LatLong Information Verified
Geographical Map
Broad-scale environmental context (MIxS:0000012)
Local environmental context (MIxS:0000013)
Environmental medium (MIxS:0000014)
Altitude  (meter)  (MIGS-4.4)
Elevation
Depth (MIGS-4.3)
Subsurface Depth
Sample Collection Temperature Range is 30 to 30 Celsius.
Salinity (MIGS-6.3) Halophile
Pressure
pH
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Habitat  Biofilm
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence No
Irradiance
Oxygen Presence Anoxic
GROWTH CONDITIONS
Growth Conditions

Custom Biogas/Reactor Metadata Package

* oDM - organic dry matter
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Substrates
Temperature
Retention Time
Yield (L/Kg-oDM)
Volatile Organic Acids (VOA)
Total Inorganic Carbon (TIC)
VOA/TIC
Acetic Acid
Ammonium
Butanol
Ethanol
Propanol
Methanol
Butyl Acid
Iso Butyl Acid
Valeric Acid
Iso Valeric Acid
Propionic Acid
Methane Percentage

 

 

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