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BIOSAMPLE INFORMATION | |||||
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GOLD Biosample ID
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Gb0305923 |
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Biosample Name
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Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere |
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Other Names
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Habitat
(MIGS-6)
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Root endosphere |
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Community
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microbial communities |
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Location
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poplar common garden site in Corvallis, Oregon, USA |
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Identifier
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GW-4579-Co2_44_8 endosphere |
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NCBI Taxonomy ID
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NCBI Taxonomy Name
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root metagenome |
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Add Date
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2021-08-20 |
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Biosample Description
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Root microbial communities from poplar common garden site in Corvallis, Oregon, USA |
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Biosample Information Visibility
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Public | ||||
ECOSYSTEM CLASSIFICATION
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Ecosystem |
Host-associated |
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Ecosystem Category |
Plants |
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Ecosystem Type |
Roots |
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Ecosystem Subtype |
Endosphere |
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Specific Ecosystem |
Unclassified |
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Ecosystem Path Id |
5304 |
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BIOSAMPLE COMPOSITION | |||||
Number of Studies |
1 |
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Number of Seq Projects |
1 |
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Number of Analysis Projects |
1 |
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Number of Related Biosamples |
317 |
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BIOSAMPLE ISOLATION | |
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Sample Collection Site
(MIGS-13)
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Fine root endosphere |
Sample Collection Date
(MIGS-5)
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9/4/2020 |
Sample Collection Publication
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Sample Isolation Comments |
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Size Fraction
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Sample Isolation Country/Ocean |
USA |
Sample Collection Method
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Sample Contact Name
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Christopher W. Schadt |
Sample Contact Email
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[email protected] |
SIP METADATA | |
Sample Volume (ul) |
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Concentration (ng/ul) |
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Fraction Density (g/ml) |
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Sample Group Name |
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Isotope Label |
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ENVIRONMENTAL INFORMATION | |||||
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Geographic Location
(MIGS-4)
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USA: Oregon |
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Latitude
(MIGS-4.1)
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44.587786 |
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Longitude
(MIGS-4.2)
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-123.193893 |
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LatLong Information
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Geographical Map | |||||
Broad-scale environmental context (MIxS:0000012) |
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Local environmental context (MIxS:0000013) |
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Environmental medium (MIxS:0000014) |
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Altitude
(meter)
(MIGS-4.4)
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Elevation |
62 Meters.
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Depth
(MIGS-4.3)
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Subsurface Depth |
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Sample Collection Temperature |
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Salinity (MIGS-6.3) |
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Pressure |
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pH |
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Chlorophyll Concentration |
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Nitrate Concentration |
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Oxygen Concentration |
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Salinity Concentration |
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Methane Concentration (mmol) |
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Sample Conductivity
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Habitat |
Root endosphere |
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Bicarbonate Concentration (mM) |
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Soluble Iron Concentration (uM) |
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Hydrogen Sulfide Concentration (mM) |
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Hydrogen Sulfide Presence |
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Irradiance |
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Oxygen Presence |
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GROWTH CONDITIONS | |||||
Growth Conditions |
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HOST INFORMATION | |
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Isolation Host Name
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Populus |
Host Taxonomy ID
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3689 |
Host Gender |
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Host Race |
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Host Age |
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Host Health Condition |
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Health Disease Status
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Patient Visit Number |
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Host Medication |
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Medical Record Number |
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Host Body Site |
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Host Body Subsite |
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Host Body Product |
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Host Specificity or Range |
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Host Comments |
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Host Diseases (MIGS-15) |
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