Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Biosample ID
|
Gb0241405 |
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Biosample Name
|
Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.L4 |
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Other Names
|
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Habitat
(MIGS-6)
|
sediment |
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Community
|
enriched cells |
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Location
|
Santa Monica Basin, California, United States |
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Identifier
|
ANME aggregate JGI_Orphan.7059.BNCT.2.L4 |
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NCBI Taxonomy ID
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|
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NCBI Taxonomy Name
|
sediment metagenome |
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Add Date
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2019-10-03 |
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Biosample Description
|
Enriched cells of cold seep sediment from Santa Monica Basin, California, United States |
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Biosample Information Visibility
|
Public | ||||
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ECOSYSTEM CLASSIFICATION
|
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| Ecosystem |
Environmental |
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| Ecosystem Category |
Aquatic |
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| Ecosystem Type |
Marine |
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| Ecosystem Subtype |
Cold seeps |
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| Specific Ecosystem |
Sediment |
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| Ecosystem Path Id |
4024 |
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| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
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| Number of Seq Projects |
1 |
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| Number of Analysis Projects |
1 |
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| Number of Related Biosamples |
100 |
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| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
cold seep sediment |
|
Sample Collection Date
(MIGS-5)
|
2013-05-07 |
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Sample Collection Publication
|
|
| Sample Isolation Comments |
|
|
Size Fraction
|
|
| Sample Isolation Country/Ocean |
USA |
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Sample Collection Method
|
|
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Sample Contact Name
|
Victoria Orphan |
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Sample Contact Email
|
[email protected] |
| SIP METADATA | |
| Sample Volume (ul) |
|
| Concentration (ng/ul) |
|
| Fraction Density (g/ml) |
|
| Sample Group Name |
|
| Isotope Label |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |||||
| ENVIRONMENTAL INFORMATION | |||||
|---|---|---|---|---|---|
|
Geographic Location
(MIGS-4)
|
USA: California |
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|
Latitude
(MIGS-4.1)
|
33.7988 |
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|
Longitude
(MIGS-4.2)
|
-118.6476 |
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LatLong Information
|
|
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| Geographical Map | |||||
| Broad-scale Environmental Context (MIxS:0000012) |
|
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| Local Environmental Context (MIxS:0000013) |
|
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| Environmental Medium (MIxS:0000014) |
|
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Altitude
(meter)
(MIGS-4.4)
|
|
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| Elevation |
|
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|
Depth
(MIGS-4.3)
|
863 Meters.
|
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| Subsurface Depth |
|
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| Sample Collection Temperature |
|
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| Salinity (MIGS-6.3) |
|
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| Pressure |
|
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| pH |
|
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| Chlorophyll Concentration |
|
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| Nitrate Concentration |
|
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| Oxygen Concentration |
|
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| Salinity Concentration |
|
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| Methane Concentration (mmol) |
|
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Sample Conductivity
|
|
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| Habitat |
sediment |
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| Bicarbonate Concentration (mM) |
|
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| Soluble Iron Concentration (uM) |
|
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| Hydrogen Sulfide Concentration (mM) |
|
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| Hydrogen Sulfide Presence |
|
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| Irradiance |
|
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| Oxygen Presence |
|
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| GROWTH CONDITIONS | |||||
| Growth Conditions |
|
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