Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Biosample ID
|
Gb0196174 |
||||
|
Biosample Name
|
Lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_8 |
||||
|
Other Names
|
|
||||
|
Habitat
(MIGS-6)
|
plant biomass |
||||
|
Community
|
microbial communities |
||||
|
Location
|
Joint BioEnergy Institute, Emeryville, California, United States |
||||
|
Identifier
|
SM_Day9_8 |
||||
|
NCBI Taxonomy ID
|
|
||||
|
NCBI Taxonomy Name
|
phyllosphere metagenome |
||||
|
Add Date
|
2018-11-08 |
||||
|
Biosample Description
|
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States |
||||
|
Biosample Information Visibility
|
Public | ||||
|
ECOSYSTEM CLASSIFICATION
|
|||||
| Ecosystem |
Engineered |
||||
| Ecosystem Category |
Bioreactor |
||||
| Ecosystem Type |
SSF (Solid state fermentation) |
||||
| Ecosystem Subtype |
Aerobic |
||||
| Specific Ecosystem |
Biomass |
||||
| Ecosystem Path Id |
7775 |
||||
| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
||||
| Number of Seq Projects |
1 |
||||
| Number of Analysis Projects |
4 |
||||
| Number of Related Biosamples |
76 |
||||
| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
enrichment cultures |
|
Sample Collection Date
(MIGS-5)
|
2017-12-08 |
|
Sample Collection Publication
|
|
| Sample Isolation Comments |
|
|
Size Fraction
|
|
| Sample Isolation Country/Ocean |
USA |
|
Sample Collection Method
|
|
|
Sample Contact Name
|
Lauren Tom |
|
Sample Contact Email
|
[email protected] |
| SIP METADATA | |
| Sample Volume (ul) |
|
| Concentration (ng/ul) |
|
| Fraction Density (g/ml) |
|
| Sample Group Name |
|
| Isotope Label |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |||||
| ENVIRONMENTAL INFORMATION | |||||
|---|---|---|---|---|---|
|
Geographic Location
(MIGS-4)
|
USA: California |
||||
|
Latitude
(MIGS-4.1)
|
37.8406 |
||||
|
Longitude
(MIGS-4.2)
|
-122.2901 |
||||
|
LatLong Information
|
|
||||
| Geographical Map | |||||
| Broad-scale Environmental Context (MIxS:0000012) |
|
||||
| Local Environmental Context (MIxS:0000013) |
|
||||
| Environmental Medium (MIxS:0000014) |
|
||||
|
Altitude
(meter)
(MIGS-4.4)
|
|
||||
| Elevation |
5 Meters.
|
||||
|
Depth
(MIGS-4.3)
|
|
||||
| Subsurface Depth |
|
||||
| Sample Collection Temperature |
|
||||
| Salinity (MIGS-6.3) |
|
||||
| Pressure |
|
||||
| pH |
|
||||
| Chlorophyll Concentration |
|
||||
| Nitrate Concentration |
|
||||
| Oxygen Concentration |
|
||||
| Salinity Concentration |
|
||||
| Methane Concentration (mmol) |
|
||||
|
Sample Conductivity
|
|
||||
| Habitat |
plant biomass |
||||
| Bicarbonate Concentration (mM) |
|
||||
| Soluble Iron Concentration (uM) |
|
||||
| Hydrogen Sulfide Concentration (mM) |
|
||||
| Hydrogen Sulfide Presence |
|
||||
| Irradiance |
|
||||
| Oxygen Presence |
|
||||
| GROWTH CONDITIONS | |||||
| Growth Conditions |
|
||||
Custom Biogas/Reactor Metadata Package* oDM - organic dry matter | |
| - indicates that you can edit this field inline. Click return to save your edits. | |
| Substrates |
|
| Temperature |
|
| Retention Time |
|
| Yield (L/Kg-oDM) |
|
| Volatile Organic Acids (VOA) |
|
| Total Inorganic Carbon (TIC) |
|
| VOA/TIC |
|
| Acetic Acid |
|
| Ammonium |
|
| Butanol |
|
| Ethanol |
|
| Propanol |
|
| Methanol |
|
| Butyl Acid |
|
| Iso Butyl Acid |
|
| Valeric Acid |
|
| Iso Valeric Acid |
|
| Propionic Acid |
|
| Methane Percentage |
|
Changing the biosample visibility.
Do you want to continue with this visibility change?
Changing the biosample visibility:
Do you want to continue with this visibility change?
