Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
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GOLD Biosample ID
|
Gb0196170 |
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Biosample Name
|
Lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_1 |
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Other Names
|
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Habitat
(MIGS-6)
|
plant biomass |
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Community
|
microbial communities |
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Location
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Joint BioEnergy Institute, Emeryville, California, United States |
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Identifier
|
SM_Day9_1 |
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NCBI Taxonomy ID
|
|
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NCBI Taxonomy Name
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phyllosphere metagenome |
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Add Date
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2018-11-08 |
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Biosample Description
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Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States |
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Biosample Information Visibility
|
Public | ||||
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ECOSYSTEM CLASSIFICATION
|
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| Ecosystem |
Engineered |
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| Ecosystem Category |
Bioreactor |
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| Ecosystem Type |
SSF (Solid state fermentation) |
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| Ecosystem Subtype |
Aerobic |
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| Specific Ecosystem |
Biomass |
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| Ecosystem Path Id |
7775 |
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| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
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| Number of Seq Projects |
1 |
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| Number of Analysis Projects |
4 |
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| Number of Related Biosamples |
76 |
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| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
enrichment cultures |
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Sample Collection Date
(MIGS-5)
|
2017-12-08 |
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Sample Collection Publication
|
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| Sample Isolation Comments |
|
|
Size Fraction
|
|
| Sample Isolation Country/Ocean |
USA |
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Sample Collection Method
|
|
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Sample Contact Name
|
Lauren Tom |
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Sample Contact Email
|
[email protected] |
| SIP METADATA | |
| Sample Volume (ul) |
|
| Concentration (ng/ul) |
|
| Fraction Density (g/ml) |
|
| Sample Group Name |
|
| Isotope Label |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |||||
| ENVIRONMENTAL INFORMATION | |||||
|---|---|---|---|---|---|
|
Geographic Location
(MIGS-4)
|
USA: California |
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Latitude
(MIGS-4.1)
|
37.8406 |
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Longitude
(MIGS-4.2)
|
-122.2901 |
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LatLong Information
|
|
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| Geographical Map | |||||
| Broad-scale Environmental Context (MIxS:0000012) |
|
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| Local Environmental Context (MIxS:0000013) |
|
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| Environmental Medium (MIxS:0000014) |
|
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Altitude
(meter)
(MIGS-4.4)
|
|
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| Elevation |
5 Meters.
|
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Depth
(MIGS-4.3)
|
|
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| Subsurface Depth |
|
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| Sample Collection Temperature |
|
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| Salinity (MIGS-6.3) |
|
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| Pressure |
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| pH |
|
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| Chlorophyll Concentration |
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| Nitrate Concentration |
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| Oxygen Concentration |
|
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| Salinity Concentration |
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| Methane Concentration (mmol) |
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Sample Conductivity
|
|
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| Habitat |
plant biomass |
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| Bicarbonate Concentration (mM) |
|
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| Soluble Iron Concentration (uM) |
|
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| Hydrogen Sulfide Concentration (mM) |
|
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| Hydrogen Sulfide Presence |
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| Irradiance |
|
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| Oxygen Presence |
|
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| GROWTH CONDITIONS | |||||
| Growth Conditions |
|
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Custom Biogas/Reactor Metadata Package* oDM - organic dry matter | |
| - indicates that you can edit this field inline. Click return to save your edits. | |
| Substrates |
|
| Temperature |
|
| Retention Time |
|
| Yield (L/Kg-oDM) |
|
| Volatile Organic Acids (VOA) |
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| Total Inorganic Carbon (TIC) |
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| VOA/TIC |
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| Acetic Acid |
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| Ammonium |
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| Butanol |
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| Ethanol |
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| Propanol |
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| Methanol |
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| Butyl Acid |
|
| Iso Butyl Acid |
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| Valeric Acid |
|
| Iso Valeric Acid |
|
| Propionic Acid |
|
| Methane Percentage |
|
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