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BIOSAMPLE INFORMATION
GOLD Biosample ID Gb0119275
Biosample Name Fresh water microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11
Other Names
Habitat (MIGS-6) Fresh water
Community microbial communities
Location Ohio, USA
Identifier Utica-2 Time Series HT 2014_7_11
NCBI Taxonomy ID 449393
NCBI Taxonomy Name freshwater metagenome
Add Date 2015-08-15
Biosample Description Fresh water that's in a Holding Tank before being mixed with chemicals
Biosample Information Visibility Public
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Freshwater
Ecosystem Subtype Water tank
Specific Ecosystem Unclassified
Ecosystem Path Id 5210
BIOSAMPLE COMPOSITION
Number of Studies 1
Number of Seq Projects 1
Number of Analysis Projects 3
Number of Related Biosamples 24
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BIOSAMPLE ISOLATION
Sample Collection Site (MIGS-13) Aqueous Sample - Fresh water in a Holding Tank
Sample Collection Date (MIGS-5) 7/11/2014
Sample Collection Publication
Sample Isolation Comments
Size Fraction 0.2 um
Sample Isolation Country USA
Sample Collection Method
Sample Contact Name Kelly Wrighton
Sample Contact Email kwrighton@gmail.com
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ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) USA: Ohio
Latitude (MIGS-4.1) 40.178
Longitude (MIGS-4.2) -81.073
LatLong Information
Geographical Map
Broad-scale environmental context (MIxS:0000012)
ENVO_ID ENVO_00000873
ENVO_TERM freshwater biome
Local environmental context (MIxS:0000013)
ENVO_ID ENVO_00003074
ENVO_TERM manufactured product
Environmental medium (MIxS:0000014)
ENVO_ID ENVO_00002011
ENVO_TERM fresh water
Altitude  (meter)  (MIGS-4.4)
Elevation
0
Meters.
Depth (MIGS-4.3)
0
Meters.
Subsurface Depth
Sample Collection Temperature
Salinity (MIGS-6.3)
Pressure
pH
5.8
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Methane Concentration (mmol)
Sample Conductivity
Habitat  Fresh water
Bicarbonate Concentration (mM)
Soluble Iron Concentration (uM)
Hydrogen Sulfide Concentration (mM)
Hydrogen Sulfide Presence
Irradiance
Oxygen Presence
GROWTH CONDITIONS
Growth Conditions
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WATER ENVIRONMENTAL INFORMATION
Water Depth  (meter)  (MIGS-4.3)
0
Meters.
Water Elevation  (meter) 
0
Meters.
Atmospheric Data
Tidal Stage
PHYSIOCHEMICAL PROPERTIES
Alkalinity  (milliequivalent per liter) 
Alkalinity Method
Alkyl Diethers  (mole/liter) 
Aminopeptidase Activity  (mole per liter per hour) 
Ammonium - Water  (mole per liter per hour) 
Bacterial Carbon Production  (nanogram per hour) 
Bacterial Production  (milligram per cubic meter per day) 
Bacterial Respiration  (milligram per cubic meter per day) 
Bishomohopanol
Bromide  (parts per million) 
Calcium
Carbon/Nitrogen Ratio
Chemical Administration
Chloride  (milligram per liter) 
Water Chlorophyll Concentration
Water Current
Water Sample Conductivity  (milliSiemens per centimeter) 
Density  (gram per cubic meter) 
Diether Lipids  (nanogram per liter) 
Dissolved Carbon Dioxide  (micromole per liter) 
Dissolved Hydrogen  (micromole per liter) 
Dissolved Inorganic Carbon  (microgram per liter) 
Dissolved Inorganic Nitrogen  (microgram per liter) 
Dissolved Inorganic Phosphorus  (microgram per liter) 
Dissolved Organic Carbon  (microgram per liter) 
Dissolved Organic Nitrogen  (microgram per liter) 
Downward PAR  (microEinstein per meter per second) 
Flourescence  (milligram chlorophyll a per cubic meter) 
Glucosidase Activity  (mol per liter per hour) 
Light Intensity  (lux) 
Magnesium
Mean Friction Velocity  (meter per second) 
Mean Peak Friction Velocity  (meter per second) 
N Alkanes  (micromole per liter) 
Nitrate Concentration (Water)  (meter) 
Nitrite  (micromole per liter) 
Organic Matter  (microgram per liter) 
Organic Nitrogen  (microgram per liter) 
Organism Count  (number of organism per cubic meter) 
Oxygenation Status of Sample
Particulate Organic Carbon  (microgram per liter) 
Particulate Organic Nitrogen  (microgram per liter) 
Perturbation
Petroleum Hydrocarbons  (micromole per liter) 
Water pH
5.8
Phaeopigments  (milligram per cubic meter) 
Phospholipid Fatty Acid
Photon Flux  (micromole per square meter per second) 
Potassium  (parts per million) 
Water Pressure  (meter) 
Primary Production  (milligram per cubic meter per day) 
Water Dissolved Oxygen
Water Phosphate
Water Silicate
Redox Potential  (millivolt) 
Water Salinity (MIGS-6.3)
Sodium water  (parts per million) 
Soluble Reactive Phosphorus  (micromole per liter) 
Sulfate Water
Sulfide water
Suspended Particulate Matter  (milligram per liter) 
Water Collection Temperature  (Celcius) 
Total Depth Water Column  (meter) 
Total Dissolved Nitrogen  (microgram per liter) 
Total Inorganic Nitrogen  (microgram per liter) 
Total Organic Carbon (Water)  (grams/kilogram) 
Total Particulate Carbon
Total Phosphorus  (micromole per liter) 
Water Total Nitrogen
Water Turbidity
Size-Fraction Lower Threshold  (micrometer)  0.2 um
Size-Fraction Upper Threshold  (micrometer) 
Miscellaneous Parameter
SAMPLE PREPARATION
Sample Storage Duration
Sample Storage Location
Sample Storage Temperature  (degree Celsius) 
Water Sample Biomass
Pool DNA Extracts
Water Sample Weight DNA Extraction

 

 

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