Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,215 |
 - indicates that you can edit this field inline. Click return to save your edits. | |||||
| BIOSAMPLE INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Biosample ID
|
Gb0119274 |
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Biosample Name
|
Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 |
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Other Names
|
|
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Habitat
(MIGS-6)
|
Lake water |
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Community
|
microbial communities |
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Location
|
Ohio, USA |
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Identifier
|
Utica-2 Time Series LW 2014_7_11 |
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NCBI Taxonomy ID
|
|
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NCBI Taxonomy Name
|
lake water metagenome |
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Add Date
|
2015-08-15 |
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Biosample Description
|
|
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Biosample Information Visibility
|
Public | ||||
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ECOSYSTEM CLASSIFICATION
|
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| Ecosystem |
Environmental |
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| Ecosystem Category |
Aquatic |
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| Ecosystem Type |
Freshwater |
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| Ecosystem Subtype |
Lake |
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| Specific Ecosystem |
Unclassified |
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| Ecosystem Path Id |
4179 |
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| BIOSAMPLE COMPOSITION | |||||
| Number of Studies |
1 |
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| Number of Seq Projects |
1 |
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| Number of Analysis Projects |
3 |
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| Number of Related Biosamples |
24 |
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| - indicates that you can edit this field inline. Click return to save your edits. | |
| BIOSAMPLE ISOLATION | |
|---|---|
|
Sample Collection Site
(MIGS-13)
|
Aqueous Sample - Lake water |
|
Sample Collection Date
(MIGS-5)
|
2014-07-11 |
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Sample Collection Publication
|
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| Sample Isolation Comments |
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Size Fraction
|
0.2 um |
| Sample Isolation Country/Ocean |
USA |
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Sample Collection Method
|
|
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Sample Contact Name
|
Daniel Marcus |
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Sample Contact Email
|
[email protected] |
| SIP METADATA | |
| Sample Volume (ul) |
|
| Concentration (ng/ul) |
|
| Fraction Density (g/ml) |
|
| Sample Group Name |
|
| Isotope Label |
|
| - indicates that you can edit this field inline. Click return to save your edits. | |||||
| ENVIRONMENTAL INFORMATION | |||||
|---|---|---|---|---|---|
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Geographic Location
(MIGS-4)
|
USA: Ohio |
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Latitude
(MIGS-4.1)
|
40.178 |
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Longitude
(MIGS-4.2)
|
-81.073 |
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LatLong Information
|
|
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| Geographical Map | |||||
| Broad-scale Environmental Context (MIxS:0000012) |
|
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| Local Environmental Context (MIxS:0000013) |
|
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| Environmental Medium (MIxS:0000014) |
|
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Altitude
(meter)
(MIGS-4.4)
|
|
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| Elevation |
0 Meters.
|
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Depth
(MIGS-4.3)
|
|
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| Subsurface Depth |
0 Meters.
|
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| Sample Collection Temperature |
|
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| Salinity (MIGS-6.3) |
|
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| Pressure |
|
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| pH |
|
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| Chlorophyll Concentration |
|
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| Nitrate Concentration |
below detection |
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| Oxygen Concentration |
|
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| Salinity Concentration |
|
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| Methane Concentration (mmol) |
|
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Sample Conductivity
|
|
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| Habitat |
Lake water |
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| Bicarbonate Concentration (mM) |
|
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| Soluble Iron Concentration (uM) |
|
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| Hydrogen Sulfide Concentration (mM) |
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| Hydrogen Sulfide Presence |
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| Irradiance |
|
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| Oxygen Presence |
|
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| GROWTH CONDITIONS | |||||
| Growth Conditions |
|
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| - indicates that you can edit this field inline. Click return to save your edits. | |
| WATER ENVIRONMENTAL INFORMATION | |
|---|---|
|
Water Depth
(meter)
(MIGS-4.3)
|
|
| Water Elevation (meter) |
0 Meters.
|
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Atmospheric Data
|
|
|
Tidal Stage
|
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| PHYSIOCHEMICAL PROPERTIES | |
| Alkalinity (milliequivalent per liter) |
|
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Alkalinity Method
|
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Alkyl Diethers
(mole/liter)
|
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| Aminopeptidase Activity (mole per liter per hour) |
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Ammonium - Water
(mole per liter per hour)
|
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Bacterial Carbon Production
(nanogram per hour)
|
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Bacterial Production
(milligram per cubic meter per day)
|
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Bacterial Respiration
(milligram per cubic meter per day)
|
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Bishomohopanol
|
|
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Bromide
(parts per million)
|
|
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Calcium
|
230.94 mg/L |
|
Carbon/Nitrogen Ratio
|
|
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Chemical Administration
|
|
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Chloride
(milligram per liter)
|
8.21 mg/L |
| Water Chlorophyll Concentration |
|
|
Water Current
|
|
|
Water Sample Conductivity
(milliSiemens per centimeter)
|
|
|
Density
(gram per cubic meter)
|
|
|
Diether Lipids
(nanogram per liter)
|
|
|
Dissolved Carbon Dioxide
(micromole per liter)
|
|
|
Dissolved Hydrogen
(micromole per liter)
|
|
|
Dissolved Inorganic Carbon
(microgram per liter)
|
|
|
Dissolved Inorganic Nitrogen
(microgram per liter)
|
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Dissolved Inorganic Phosphorus
(microgram per liter)
|
|
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Dissolved Organic Carbon
(microgram per liter)
|
|
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Dissolved Organic Nitrogen
(microgram per liter)
|
|
|
Downward PAR
(microEinstein per meter per second)
|
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Flourescence
(milligram chlorophyll a per cubic meter)
|
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Glucosidase Activity
(mol per liter per hour)
|
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Light Intensity
(lux)
|
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Magnesium
|
|
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Mean Friction Velocity
(meter per second)
|
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Mean Peak Friction Velocity
(meter per second)
|
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N Alkanes
(micromole per liter)
|
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| Nitrate Concentration (Water) (meter) |
below detection |
|
Nitrite
(micromole per liter)
|
|
|
Organic Matter
(microgram per liter)
|
|
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Organic Nitrogen
(microgram per liter)
|
|
|
Organism Count
(number of organism per cubic meter)
|
|
|
Oxygenation Status of Sample
|
|
|
Particulate Organic Carbon
(microgram per liter)
|
|
|
Particulate Organic Nitrogen
(microgram per liter)
|
|
|
Perturbation
|
|
|
Petroleum Hydrocarbons
(micromole per liter)
|
|
| Water pH |
|
|
Phaeopigments
(milligram per cubic meter)
|
|
|
Phospholipid Fatty Acid
|
|
|
Photon Flux
(micromole per square meter per second)
|
|
|
Potassium
(parts per million)
|
|
| Water Pressure (meter) |
|
|
Primary Production
(milligram per cubic meter per day)
|
|
| Water Dissolved Oxygen |
|
| Water Phosphate |
|
| Water Silicate |
|
|
Redox Potential
(millivolt)
|
|
| Water Salinity (MIGS-6.3) |
|
|
Sodium water
(parts per million)
|
|
|
Soluble Reactive Phosphorus
(micromole per liter)
|
|
| Sulfate Water |
898.98 mg/L |
|
Sulfide water
|
|
|
Suspended Particulate Matter
(milligram per liter)
|
|
| Water Collection Temperature (Celsius) |
|
|
Total Depth Water Column
(meter)
|
|
|
Total Dissolved Nitrogen
(microgram per liter)
|
|
|
Total Inorganic Nitrogen
(microgram per liter)
|
|
| Total Organic Carbon (Water) (grams/kilogram) |
|
|
Total Particulate Carbon
|
|
|
Total Phosphorus
(micromole per liter)
|
|
|
Water Total Nitrogen
|
|
|
Water Turbidity
|
|
|
Size-Fraction Lower Threshold
(micrometer)
|
0.2 um |
|
Size-Fraction Upper Threshold
(micrometer)
|
|
|
Miscellaneous Parameter
|
|
| SAMPLE PREPARATION | |
|
Sample Storage Duration
|
|
| Sample Storage Location |
|
|
Sample Storage Temperature
(degree Celsius)
|
|
| Water Sample Biomass |
|
| Water Sample Volume/Weight DNA Extraction |
|
| Package Version |
6 |
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